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Functional
Annotation of
ANimal
Genomes (FAANG) Project
— A coordinated international action to accelerate Genome to Phenome
|
Zoom: |
| Contact: | Tuggle, Christopher (cktuggle![]() |
Program(All times are US Eastern time) |
Recordings | |
March 5 | Strategies for assigning cell identity in single-cell datasets Organizers: Fiona McCarthy/Ben Cole |
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11:00-11:05 | Session objective, Introduction of speakers, Instructions to participants. Ben Cole Lawrence Berkeley National Laboratory and Fiona McCarthy University of Arizona. | |
11:05-11:30 | "Orthologous marker groups reveal broad cell identity conservation across plant single-cell transcriptomes." Song Li, Virginia Polytechnic Institute and State University, USA | |
11:30-11:55 | "CellTypist and CellHint: towards automated annotation and integration of single-cell data." Chaun Xu, Cambridge Stem Cell Institute, Cambridge, UK | |
11:55-12:05 | Q&A for the speakers | |
12:05-12:30 | Community discussion about assigning cell identity in single-cell data. | |
March 12 | The use of single cell data for advancing Genome 2 Phenome. Organizers: Chris Tuggle, Wes Warren |
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11:00-11:05 | Session objective, Introduction of speakers, Instructions to participants. Wes Warren, University of Missouri. | |
11:05-11:30 | "Cell type Expression phenotyping from deconvolution of bulk RNAseq data." Chris Tuggle Iowa State University, Ames, USA. | |
11:30-11:55 | "The sc-eQTLGen consortium framework: a federated pipeline for genotype- and phenotype-based association analyses." Monique van der Wijst, Groningen University Medical Center, Groningen, The Netherlands. | |
11:55-12:05 | Q&A for the speakers. | |
12:05-12:30 | Community discussion about assigning cell identity in single-cell data | |
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