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Functional Annotation of ANimal Genomes (FAANG) Project
— A coordinated international action to accelerate Genome to Phenome

Animals, Samples and Assays (ASA) Committee

The overall objective of the Animals, Samples and Assays Working Committee (ASA) is to achieve and share standardized protocols for adequate sample collection, storage, processing, and respective assays as required for FAANG core assays. Standardization of the different steps involved is the essential prerequisite for integration of multiple datasets.
  • Foster potential collaborations in order to avoid redundancies and optimize synergies in terms of sample collection.
  • Set-up and standardize assays to be carried out on the same tissues/species, in order to obtain suitable datasets for the work of the FAANG "Metadata and Sharing Working group" and "Bioinformatics and Analysis Working Group".
  • Contribute to the organized scientific dissemination to the whole community (FAANG Communication Working Group).
Group’s activities

Discussions among members take place i) over email via the faang-sample@animalgenome.org mailing list.

ASA members can meet by video-conference (Zoom) around specific topics upon members’ request to co-chairs (Giuffra, Zhou).

Sharing protocols to FAANG FTP site

The FAANG sample and experiment metadata specification (see M&DA webpage) requires your protocols to be publicly available.  It is best these are hosted in a location which will be available in the long term so locations such as lab pages are inadvisable as web addresses change and hosting goes away.

FAANG hosts protocols on its FTP site protocols directory (ftp://ftp.faang.ebi.ac.uk/ftp/protocols/). In the ‘Samples’ sub-directory you will find existing protocols in use for sample collection and treatment suited for long term storing; in the ‘Assays’ sub-directory you will find protocols in use for FAANG assays optimized on specific cells or tissues.

Protocols by definition evolve in time, thus improved versions (i.e. yielding datasets of better quality) should be uploaded as often as necessary. Therefore, each protocol on the FTP ‘Sample’ and ‘Assay’ directories includes a date stamp, so if protocols are subsequently updated then you can submit the same protocol name with a different date stamp to indicate an updated version. Any modification of an existing file will be recorded as a new file with an updated timestamp.

For the coordinated improvement of existing protocols, as well as to exchange views, questions and related draft files on new protocols you are testing, we strongly recommend discussion via email to keep everyone informed of progress (faang-sample@animalgenome.org).

 

Contact

Members

( Chairs of the group )
  • Behnam Abasht
  • Jason Abernathy
  • Herve Acloque
  • Biola Ajibike
  • Faisal Almathen
  • Doug Antczak
  • Christian Anthon
  • Juan Jose Arranz
  • Eric BARREY
  • Christine Baes
  • Maria Ballester
  • Keith Ballingall
  • Mohammad Hossein Banabazi
  • Rebecca Bellone
  • Geoffrey Berguet
  • Christopher Bidwell
  • Gudrun Brockmann
  • David Burt
  • Angela Canovas
  • Stefano Capomaccio
  • Katia Cappelli
  • Eduardo Casas
  • Amanda Chamberlain
  • Amanda Chamberlain
  • Guobin Chang
  • Hans Cheng
  • Jakub Cieslak
  • Emily Clark
  • Shannon Clarke
  • Laura Clarke
  • Vincent Coustham
  • Richard Crooijmans
  • Silvina Diaz
  • Sarah Djebali
  • Ivona Djurkin
  • Yvonne Drechsler
  • Ramy Elgendy
  • Lel Eory
  • Jun Fan
  • Heather Finlayson
  • Carrie Finno
  • Marina Fortes
  • Clare Gill
  • Elisabetta Giuffra 
  • Elena Giulotto
  • Michael Gonda
  • Jan Gorodkin
  • Martien Groenen
  • Jingjing Gu
  • Isabelle HUE
  • Sabine Hammer
  • Mathias Hansen
  • Peter Harrison
  • Ben Hayes
  • Xiaoxiang Hu
  • Wen Huang
  • Eveline Ibeagha-Awemu
  • Zhihua Jiang
  • Alexander Junge
  • Haja Kadarmideen
  • Vanmathy Kasimanickam
  • Orla Keane
  • Matthew Kent
  • Hasan Khatib
  • James Kijas
  • Ben Koop
  • Myrto Kostadima
  • Christa Kuehn
  • MINHTHONG LE
  • Susan Lamont
  • Shaye Lewis
  • Congjun Li
  • Wanbo Li
  • Sigbjorn Lien
  • Shikai Liu
  • Wansheng Liu
  • Maureen Long
  • Yu Luan
  • Joan K. Lunney
  • Charles Masembe
  • Alisha Massa
  • Raluca Mateescu
  • Mary McCulloch
  • Popoola Moshood
  • Michelle Mousel
  • Kylie Munyard
  • Brenda Murdoch
  • Charity Muriuki
  • GS Naveen kumar
  • Alan O Doherty
  • Sheila Ommeh
  • Ozge Ozmen
  • Frank Panitz
  • Maelle Pannetier
  • Romi Pena
  • Graham Plastow
  • Kisun Pokharel
  • Sophie Pollet
  • Hollie Putnam
  • Sylvie Quiniou
  • Vladimir Radosavljevic
  • Imtiaz Randhawa
  • James Reecy
  • Kent Reed
  • Coralie Reich
  • Penny Riggs
  • Monique Rijnkels
  • Carl-Johan Rubin
  • Mohamed (Moh) Salem
  • Elena Sarrapoulou
  • Robert Schnabel
  • Nicholas Sinnott-Armstrong
  • Jacqueline Smith
  • Jiuzhou Song
  • Ying Su
  • Aaron Thomas
  • Bo Thomsen
  • Michele Tixier-Boichard
  • Nares Trakooljul
  • Christopher Tuggle
  • RODRIGO VIDAL
  • Alison Van Eenennaam
  • Jon Olav Vik
  • Johanna Vilkki
  • Silvia Vincent-Naulleau
  • Michal Vinkler
  • Mick Watson
  • Rosemarie Weikard
  • Stephen White
  • Klaus Wimmers
  • Kim Worley
  • Tianfu Yang
  • Mohammed Yaro
  • Rachel Young
  • Huanmin Zhang
  • Yiqiang Zhao
  • Huaijun Zhou 
  • Natalia Zinovieva
 
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