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• ‘10^nRnaSeq’ project in chicken for Genotype-Tissue Expression

  INRAE, Institut Agro, Brittany region 10^nRnaSeq [€130,000] (2020-01-06~2023-12-31)

  Objectives: 1) Workflow for identifying SNP variants and genotypes from RNAseq data 2) Workflow for identifying cis-eQTL by Allele Specific Expression from RNAseq data 3) Explore cis-eQTL and short variants in protein-coding genes (PCG) and LNC in different populations.

  Project directors:

  • Hervé Acloque and Elisabetta Giuffra, INRAE Jouy-en-Josas, France
  • Sarah Djebali, INSERM Toulouse, France
  • Sylvain Foissac and Frédérique Pitel, INRAE Toulouse, France
  • Christophe Klopp and Maria Bernard, INRAE Toulouse, France
  • Sandrine Lagarrigue and Thomas Derrien, Institut Agro/INRAE and CNRS, Rennes, France

  Primary contact: Christophe.klopp@inrae.fr & Sandrine.lagarrigue@agrocampus-ouest.fr Linked projects: FR-AgENCODE, GENE-SWitCH

  Contact: Sylvain Foissac (sylvain.foissac@inrae.fr)

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