Whole genome analysis for QTL/association enrichment
Running...
Version: Enrich S: beta v0.8
Data:
Number of offspring traits traits:
2
Number of QTL / associations found:
305
Number of chromosomes where QTL / associations are found:
27
Chi-squared (χ2) test: are offspring traits traits over-represented on some chromosomes?
Chromosomes
Total χ2
df
p-values
FDR *
Size of χ2
Chromosome X
99.47784
26
1.567368e-10
4.231894e-09
Chromosome 1
16.67128
26
0.918678
9.999220e-01
Chromosome 2
20.28440
26
0.7778908
9.999220e-01
Chromosome 3
33.24834
26
0.1550145
9.999220e-01
Chromosome 4
0.29752
26
0.998329325823115
9.999220e-01
Chromosome 5
55.49096
26
0.0006561925
8.858599e-03
Chromosome 6
13.41226
26
0.9799612
9.999220e-01
Chromosome 7
0.51390
26
0.998329325823115
9.999220e-01
Chromosome 8
0.51390
26
0.998329325823115
9.999220e-01
Chromosome 9
15.30078
26
0.9515824
9.999220e-01
Chromosome 10
0.51390
26
0.998329325823115
9.999220e-01
Chromosome 11
0.08768
26
0.998329325823115
9.999220e-01
Chromosome 12
0.93358
26
0.998329325823115
9.999220e-01
Chromosome 13
7.01882
26
0.999922
9.999220e-01
Chromosome 14
0.01554
26
0.998329325823115
9.999220e-01
Chromosome 15
0.08768
26
0.998329325823115
9.999220e-01
Chromosome 16
7.01882
26
0.999922
9.999220e-01
Chromosome 17
7.01882
26
0.999922
9.999220e-01
Chromosome 18
15.30078
26
0.9515824
9.999220e-01
Chromosome 19
12.18604
26
0.990075
9.999220e-01
Chromosome 20
0.93358
26
0.998329325823115
9.999220e-01
Chromosome 21
0.93358
26
0.998329325823115
9.999220e-01
Chromosome 22
15.30078
26
0.9515824
9.999220e-01
Chromosome 23
15.30078
26
0.9515824
9.999220e-01
Chromosome 24
12.18604
26
0.990075
9.999220e-01
Chromosome 25
1.92374
26
0.998329325823115
9.999220e-01
Chromosome 26
7.01882
26
0.999922
9.999220e-01
Chi-squared (χ2) test: Which of the 2 offspring traits traits are over-represented in the QTLdb
Traits
Total χ2
df
p-values
FDR *
Size of χ2
Litter weight, total
74.11335
1
7.375783e-18
1.475157e-17
Offspring number
2.51231
1
0.1129602
1.129602e-01
Correlations found between some of these traits for your reference
No correlation data found on these traits
Overall Test
Data
Chi'Square Test
Fisher's Exact Test
Number of chrom.:
27
χ2
=
358.990160
Number of traits:
2
df
=
26
Number of QTLs:
305
p-value
=
2.782518e-60
FOOT NOTE: * : FDR is short for "false
discovery rate", representing the expected proportion of type I errors. A type I
error is where you incorrectly reject the null hypothesis, i.e. you get a false
positive. It's statistical definition is FDR = E(V/R | R > 0) P(R > 0), where
V = Number of Type I errors (false positives); R = Number of rejected hypotheses.
Benjamini–Hochberg procedure is a practical way to estimate FDR.
Running...
