Whole genome analysis for QTL/association enrichment
Running...
Version: Enrich S: beta v0.8
Data:
Number of udder traits traits:
5
Number of QTL / associations found:
141
Number of chromosomes where QTL / associations are found:
27
Chi-squared (χ2) test: are udder traits traits over-represented on some chromosomes?
Chromosomes
Total χ2
df
p-values
FDR *
Size of χ2
Chromosome X
9.94090
26
0.9980806
9.998717e-01
Chromosome 1
43.98345
26
0.01517812
1.024523e-01
Chromosome 2
91.53665
26
3.142979e-09
4.243022e-08
Chromosome 3
91.53665
26
3.142979e-09
4.243022e-08
Chromosome 4
43.98345
26
0.01517812
1.024523e-01
Chromosome 5
1.43025
26
0.998329325823115
9.998717e-01
Chromosome 6
9.94090
26
0.9980806
9.998717e-01
Chromosome 7
17.06855
26
0.9069974
9.998717e-01
Chromosome 8
9.94090
26
0.9980806
9.998717e-01
Chromosome 9
0.04730
26
0.998329325823115
9.998717e-01
Chromosome 10
7.38770
26
0.9998717
9.998717e-01
Chromosome 11
9.94090
26
0.9980806
9.998717e-01
Chromosome 12
17.06855
26
0.9069974
9.998717e-01
Chromosome 13
0.57920
26
0.998329325823115
9.998717e-01
Chromosome 14
1.43025
26
0.998329325823115
9.998717e-01
Chromosome 15
21.85580
26
0.69656
9.998717e-01
Chromosome 16
9.94090
26
0.9980806
9.998717e-01
Chromosome 17
3.02600
26
0.998329325823115
9.998717e-01
Chromosome 18
1.43025
26
0.998329325823115
9.998717e-01
Chromosome 19
9.94090
26
0.9980806
9.998717e-01
Chromosome 20
1.43025
26
0.998329325823115
9.998717e-01
Chromosome 21
9.94090
26
0.9980806
9.998717e-01
Chromosome 22
9.94090
26
0.9980806
9.998717e-01
Chromosome 23
0.04730
26
0.998329325823115
9.998717e-01
Chromosome 24
9.94090
26
0.9980806
9.998717e-01
Chromosome 25
0.57920
26
0.998329325823115
9.998717e-01
Chromosome 26
1.43025
26
0.998329325823115
9.998717e-01
Chi-squared (χ2) test: Which of the 5 udder traits traits are over-represented in the QTLdb
Traits
Total χ2
df
p-values
FDR *
Size of χ2
Teat number
1.93214
4
0.7482386
7.482386e-01
Teat placement
56.53333
4
1.549946e-11
7.749730e-11
udder attachment
34.24996
4
6.622062e-07
1.655515e-06
udder depth
33.25002
4
1.061645e-06
1.769408e-06
udder shape
14.23333
4
0.006586418
8.233022e-03
Correlations found between some of these traits for your reference
No correlation data found on these traits
Overall Test
Data
Chi'Square Test
Fisher's Exact Test
Number of chrom.:
27
χ2
=
435.319150
Number of traits:
5
df
=
104
Number of QTLs:
141
p-value
=
4.195968e-42
FOOT NOTE: * : FDR is short for "false
discovery rate", representing the expected proportion of type I errors. A type I
error is where you incorrectly reject the null hypothesis, i.e. you get a false
positive. It's statistical definition is FDR = E(V/R | R > 0) P(R > 0), where
V = Number of Type I errors (false positives); R = Number of rejected hypotheses.
Benjamini–Hochberg procedure is a practical way to estimate FDR.
Running...
