Whole genome analysis for QTL/association enrichment
Running...
Version: Enrich S: beta v0.8
Data:
Number of growth traits:
16
Number of QTL / associations found:
3,190
Number of chromosomes where QTL / associations are found:
27
Chi-squared (χ2) test: are growth traits over-represented on some chromosomes?
Chromosomes
Total χ2
df
p-values
FDR *
Size of χ2
Chromosome X
574.77408
26
1.069348e-104
1.604022e-104
Chromosome 1
842.00928
26
9.630332e-161
2.889100e-160
Chromosome 2
116335.88768
26
9e-41
1.104545e-40
Chromosome 3
679.82240
26
1.230414e-126
2.372941e-126
Chromosome 4
913.87888
26
6.356543e-176
2.860444e-175
Chromosome 5
301.03872
26
1.308755e-48
1.859810e-48
Chromosome 6
6251.31328
26
9e-41
1.104545e-40
Chromosome 7
35.31328
26
0.1050396
1.090796e-01
Chromosome 8
197.07888
26
3.188360e-28
3.586905e-28
Chromosome 9
3680.27888
26
9e-41
1.104545e-40
Chromosome 10
848.34912
26
4.425482e-162
1.493600e-161
Chromosome 11
0.46448
26
0.998329325823115
9.983293e-01
Chromosome 12
647.52144
26
7.099181e-120
1.197987e-119
Chromosome 13
981.84624
26
2.614255e-190
1.411698e-189
Chromosome 14
207.54656
26
3.142623e-30
3.689166e-30
Chromosome 15
827.04752
26
1.378284e-157
3.721367e-157
Chromosome 16
610.60608
26
3.65061e-112
5.798028e-112
Chromosome 17
148.80304
26
3.479954e-19
3.758350e-19
Chromosome 18
806.01680
26
3.734238e-153
9.165857e-153
Chromosome 19
685.52016
26
7.873436e-128
1.635252e-127
Chromosome 20
1251.91520
26
1.088086e-247
9.792774e-247
Chromosome 21
1175.00992
26
2.550269e-231
1.721432e-230
Chromosome 22
647.52144
26
7.099181e-120
1.197987e-119
Chromosome 23
1304.53968
26
6.662696e-259
1.798928e-257
Chromosome 24
891.76480
26
3.00512e-171
1.159118e-170
Chromosome 25
764.76784
26
1.804022e-144
4.059049e-144
Chromosome 26
1278.09200
26
2.884805e-253
3.894487e-252
Chi-squared (χ2) test: Which of the 16 growth traits are over-represented in the QTLdb
Traits
Total χ2
df
p-values
FDR *
Size of χ2
Age at maximum daily gain
40.65467
15
0.0003609323
3.849945e-04
Average daily gain
159.77735
15
2.723689e-26
7.263171e-26
Body circumference
244.46145
15
1.713701e-43
5.483843e-43
Body depth
89.58596
15
1.184853e-12
1.579804e-12
Body height
115.71609
15
1.278004e-17
2.044806e-17
Body length
487.35115
15
2.672267e-94
1.425209e-93
Body weight
255.59845
15
8.715334e-46
3.486134e-45
Body weight change
63.51321
15
6.215878e-08
7.650311e-08
Body width
92.15101
15
3.930311e-13
5.716816e-13
Hip width
1012.30899
15
3.098883e-206
2.479106e-205
Maximum daily gain
144.00001
15
3.730598e-23
7.461196e-23
Shin circumference
1230.24985
15
5.192472e-253
8.307955e-252
Tail length
47.51314
15
3.046092e-05
3.481248e-05
Tail size
4.10528
15
0.9973718
9.973718e-01
Total bone
129.89448
15
2.229895e-20
3.964258e-20
bone density
158.66677
15
4.538252e-26
1.037315e-25
Correlations found between some of these traits for your reference
No correlation data found on these traits
Overall Test
Data
Chi'Square Test
Fisher's Exact Test
Number of chrom.:
27
χ2
=
142888.727680
Number of traits:
16
df
=
390
Number of QTLs:
3,190
p-value
=
0
FOOT NOTE: * : FDR is short for "false
discovery rate", representing the expected proportion of type I errors. A type I
error is where you incorrectly reject the null hypothesis, i.e. you get a false
positive. It's statistical definition is FDR = E(V/R | R > 0) P(R > 0), where
V = Number of Type I errors (false positives); R = Number of rejected hypotheses.
Benjamini–Hochberg procedure is a practical way to estimate FDR.
Running...
