Release 59
(Apr 20, 2026)

Whole genome analysis for QTL/association enrichment

Running...
Version: Enrich S: beta v0.8
Search: to limit the list of your trait choices:
(optional) focus on chromosome with Mb windows across its length

Data:

Number of immune capacity traits:9
Number of QTL / associations found:60
Number of chromosomes where QTL / associations are found:19

Chi-squared (χ2) test: are immune capacity traits over-represented on some chromosomes?

Chromosomes Total χ2 df p-values FDR * Size of χ2
Chromosome 10.07101180.9983293258231159.999988e-01
Chromosome 22.02104180.99999889.999988e-01
Chromosome 366.82104181.547154e-072.939593e-06
Chromosome 49.67104180.94211599.999988e-01
Chromosome 53.82104180.99982989.999988e-01
Chromosome 62.02104180.99999889.999988e-01
Chromosome 99.67104180.94211599.999988e-01
Chromosome 103.82104180.99982989.999988e-01
Chromosome 1113.27104180.77522629.999988e-01
Chromosome 1213.27104180.77522629.999988e-01
Chromosome 1313.27104180.77522629.999988e-01
Chromosome 159.67104180.94211599.999988e-01
Chromosome 163.82104180.99982989.999988e-01
Chromosome 173.82104180.99982989.999988e-01
Chromosome 200.07101180.9983293258231159.999988e-01
Chromosome 210.07101180.9983293258231159.999988e-01
Chromosome 223.82104180.99982989.999988e-01
Chromosome 2323.02101180.18978419.999988e-01
Chromosome 2413.27104180.77522629.999988e-01

Chi-squared (χ2) test: Which of the 9 immune capacity traits are over-represented in the QTLdb

Traits Total χ2 df p-values FDR * Size of χ2
Basophil number 58.99999 8 7.319676e-10 6.587708e-09
Change in eosinophil number 11.75001 8 0.1627112 2.092001e-01
Eosinophil number 28.00001 8 0.0004742466 1.422740e-03
Immunoglobulin A level 6.56251 8 0.5844827 5.844827e-01
Immunoglobulin E level 8.99999 8 0.3422968 3.850839e-01
Immunoglobulin G level 31.49999 8 0.000114435 5.149575e-04
Monocyte number 12.41667 8 0.1335588 2.003382e-01
Neutrophil number 15.50001 8 0.05012189 9.021940e-02
White blood cell number 15.87499 8 0.04420474 9.021940e-02

Correlations found between some of these traits for your reference

No correlation data found on these traits

Overall Test

Data Chi'Square Test Fisher's Exact Test
Number of chrom.:19 χ2=195.299640
Number of traits:9 df=144
Number of QTLs:60 p-value=0.002871024

FOOT NOTE: * : FDR is short for "false discovery rate", representing the expected proportion of type I errors. A type I error is where you incorrectly reject the null hypothesis, i.e. you get a false positive. It's statistical definition is FDR = E(V/R | R > 0) P(R > 0), where V = Number of Type I errors (false positives); R = Number of rejected hypotheses. Benjamini–Hochberg procedure is a practical way to estimate FDR.

 

© 2003-2026: USA · USDA · NRPSP8 · Program to Accelerate Animal Genomics Applications. Contact: Bioinformatics Team