Whole genome analysis for QTL/association enrichment
Running...
Version: Enrich S: beta v0.8
Data:
Number of parasite resistance traits:
7
Number of QTL / associations found:
561
Number of chromosomes where QTL / associations are found:
27
Chi-squared (χ2) test: are parasite resistance traits over-represented on some chromosomes?
Chromosomes
Total χ2
df
p-values
FDR *
Size of χ2
Chromosome X
94.83481
26
9.134012e-10
3.523119e-09
Chromosome 1
28.65303
26
0.3270946
5.887703e-01
Chromosome 2
751.26261
26
1.248138e-141
3.369973e-140
Chromosome 3
545.04338
26
1.619164e-98
2.185871e-97
Chromosome 4
0.01666
26
0.998329325823115
9.998114e-01
Chromosome 5
15.47651
26
0.9479855
9.998114e-01
Chromosome 6
371.84014
26
6.860002e-63
6.174002e-62
Chromosome 7
1.66369
26
0.998329325823115
9.998114e-01
Chromosome 8
0.01666
26
0.998329325823115
9.998114e-01
Chromosome 9
94.83481
26
9.134012e-10
3.523119e-09
Chromosome 10
39.13427
26
0.04733341
9.830785e-02
Chromosome 11
99.92570
26
1.320534e-10
7.130884e-10
Chromosome 12
166.36956
26
1.995998e-22
1.347299e-21
Chromosome 13
7.69041
26
0.9998114
9.998114e-01
Chromosome 14
0.01666
26
0.998329325823115
9.998114e-01
Chromosome 15
25.95782
26
0.4654252
7.392047e-01
Chromosome 16
7.69041
26
0.9998114
9.998114e-01
Chromosome 17
46.73319
26
0.007543973
1.697394e-02
Chromosome 18
25.95782
26
0.4654252
7.392047e-01
Chromosome 19
46.73319
26
0.007543973
1.697394e-02
Chromosome 20
46.73319
26
0.007543973
1.697394e-02
Chromosome 21
32.20917
26
0.1862957
3.592846e-01
Chromosome 22
63.95249
26
4.825377e-05
1.447613e-04
Chromosome 23
15.47651
26
0.9479855
9.998114e-01
Chromosome 24
63.95249
26
4.825377e-05
1.447613e-04
Chromosome 25
20.38029
26
0.7732007
9.998114e-01
Chromosome 26
15.47651
26
0.9479855
9.998114e-01
Chi-squared (χ2) test: Which of the 7 parasite resistance traits are over-represented in the QTLdb
Traits
Total χ2
df
p-values
FDR *
Size of χ2
Change in fecal egg count
22.16075
6
0.001132272
1.320984e-03
Fecal egg count
20.78439
6
0.002005605
2.005605e-03
Fecal oocyst count
37.90678
6
1.171494e-06
2.050114e-06
Gastrointestinal nematode resistance
92.87153
6
7.666167e-18
2.683158e-17
Trichostrongylus adult and larva count
28.46755
6
7.670127e-05
1.073818e-04
Worm count
106.76372
6
9.695668e-21
6.786968e-20
Worm length
43.24897
6
1.041311e-07
2.429726e-07
Correlations found between some of these traits for your reference
No correlation data found on these traits
Overall Test
Data
Chi'Square Test
Fisher's Exact Test
Number of chrom.:
27
χ2
=
2628.031980
Number of traits:
7
df
=
156
Number of QTLs:
561
p-value
=
0
FOOT NOTE: * : FDR is short for "false
discovery rate", representing the expected proportion of type I errors. A type I
error is where you incorrectly reject the null hypothesis, i.e. you get a false
positive. It's statistical definition is FDR = E(V/R | R > 0) P(R > 0), where
V = Number of Type I errors (false positives); R = Number of rejected hypotheses.
Benjamini–Hochberg procedure is a practical way to estimate FDR.
Running...
