| QTL Map Information |
|---|
| Chromosome: | 15 |
| QTL Peak Location: | n/a |
| QTL Span: | n/a
6.0-6.0 (Mbp) |
 |
Upper, "Suggestive": | n/a |
| Upper, "Significant": | n/a |
| Peak: | rs315520807 |
| Lower, "Significant": | n/a |
| Lower, "Suggestive": | n/a |
| Marker type: | SNP |
| Analysis type: | Association |
| Model tested: | - |
| Test base: | Comparison-wise |
| Threshold significance level: | Significant |
 |
P_values | 1.59E-08 | | Dominance effect: | n/a |
| Additive effect: | n/a |
| Associated Gene: | PPP1CC (protein phosphatase 1 catalytic subunit gamma) |
| Cis/Trans acting type: |  |
| Links:
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| Extended information: |
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| QTL Experiment in Brief |
|---|
| Animals: | Birds were fast-growing, white-feathered chickens. |
| Breeds associated:
n/a
|
| Design: | Birds were subjected to whole-genome sequencing, and GWAS were performed for meat lightness and redness. A total of 9,760,228 SNPs were used for analysis. |
| Analysis: | A univariate linear mixed model was used. |
| Software: | Picardtools v1.1152, HaplotypeCaller, ANNOVAR, GEMMA v0.98.1, CMplot in R |
| Notes: | |
| Links: | Edit |
| Reference |
|---|
| Authors: | Sun J, Yang X, Zhao G, He Z, Xing W, Chen Y, Tan X, Wang M, Li W, An B, Pan Z, Zhou Z, Wen J, Liu R |
| Affiliation: | State Key Laboratory of Animal Biotech Breeding, Institute of Animal Sciences, Chinese Academy of Agricultural Sciences, Key Laboratory of Animal (Poultry) Genetics Breeding and Reproduction, Ministry of Agriculture and Rural Affairs, Beijing, China |
| Title: | Protein phosphatase 1 catalytic subunit gamma is a causative gene for meat lightness and redness |
| Journal: | PLoS genetics, 2024, 20(11): e1011467 |
| Links: |
PubMed | Abstract | List all data
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