| QTL Map Information |
|---|
| Chromosome: | 1 |
| QTL Peak Location: | 0.00 (cM) |
| QTL Span: | n/a
15.4-15.4 (Mbp) |
 |
Upper, "Suggestive": | n/a |
| Upper, "Significant": | n/a |
| Peak: | rs13828754 |
| Lower, "Significant": | n/a |
| Lower, "Suggestive": | n/a |
| Marker type: | SNP |
| Analysis type: | Association |
| Model tested: | n/a |
| Test base: | Genome-wise |
| Threshold significance level: | Significant |
 |
P_values | 0.000002 | | Dominance effect: | n/a |
| Additive effect: | n/a |
| Associated Gene: | n/a |
| Cis/Trans acting type: |  |
| Links:
NCBI GeneDB | Edit |
Map view
|
| Extended information: |
|---|
| (none) |
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| QTL Experiment in Brief |
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| Animals: | A total of 728 Beijing-You chickens from 50 families were used in this study.
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| Breeds associated:
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| Design: | Chicken were genotyped by 60K SNP Illumina iSelect chicken array to perform GWAS to study candidate loci affects on thymus weight and spleen weight. |
| Analysis: | General linear model fit of trait measurements adjusted by Bonferroni test on genome wide p values to estimate independent LD |
| Software: | SAS, PLINK, |
| Notes: | |
| Links: | Edit |
| Reference |
|---|
| Authors: | ZHANG Lei, ZHENG Mai-Qing, LIU Ran-Ran, WEN Jie, WU Dan, HU Yao-Dong, SUN Yan-Fa, LI Peng, LIU Li, ZHAO Gui-ping |
| Affiliation: | Animal Science, Chinese Academy of Agricultural Sciences/Key Laboratory of Farm Animal Genetic Resources and Germ plasm Innovation, Ministry of Agriculture, Beijing |
| Title: | Genome-Wide Association of Thymus and Spleen Mass in Chicken |
| Journal: | Scientia Agricultura Sinica, 2012, 45(15): 3165-3175 |
| Links: |
No PubMed entry | Abstract | List all data
| Edit |
| Additional Information |
|---|
| Comments: | Candidate gene is 144kb downstream from the SNP. |
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