| QTL Map Information |
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| Chromosome: | 10 |
| QTL Peak Location: | n/a |
| QTL Span: | n/a
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Upper, "Suggestive": | n/a |
| Upper, "Significant": | n/a |
| Peak: | rs14949856 |
| Lower, "Significant": | n/a |
| Lower, "Suggestive": | n/a |
| Marker type: | SNP |
| Analysis type: | eQTL |
| Model tested: | n/a |
| Test base: | Experiment-wise |
| Threshold significance level: | Significant |
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LOD_score | 3.04 | | P_values | 0.0492 | | Dominance effect: | 1.8517 |
| Additive effect: | 0.9748 |
| Associated Gene: | LAD1 (ladinin 1) |
| Cis/Trans acting type: |  |
| Links:
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| Extended information: |
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| (none) |
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| QTL Experiment in Brief |
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| Animals: | Birds were from three generations of an intercross between a Red Junglefowl male and three females from a White Leghorn selection line. |
| Breeds associated:
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| Design: | Birds were genotyped for 652 SNP markers and analyzed for red-brown plumage coloration. Targeted eQTL mapping was then carried out. |
| Analysis: | Interval mapping and epistatic analyses were performed. |
| Software: | R/Qtl |
| Notes: | |
| Links: | Edit |
| Reference |
|---|
| Authors: | Fogelholm J1, Henriksen R1, Höglund A1, Huq N1, Johnsson M2,3, Lenz R4, Jensen P1, Wright D |
| Affiliation: | AVIAN Behavioural Genomics and Physiology Group, IFM Biology, Linköping University, Linköping, 58183, Sweden |
| Title: | CREBBP and WDR 24 Identified as Candidate Genes for Quantitative Variation in Red-Brown Plumage Colouration in the Chicken |
| Journal: | Scientific reports, 2020, 10(1): 1161 |
| Links: |
PubMed | Abstract | List all data
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