| QTL Map Information |
|---|
| Chromosome: | 14 |
| QTL Peak Location: | 30.35 (cM) |
| QTL Span: | 30.35-30.35 (cM)
17.0-17.0 (Mbp) |
 |
Upper, "Suggestive": | n/a |
| Upper, "Significant": | n/a |
| Peak: | rs68975366 |
| Lower, "Significant": | n/a |
| Lower, "Suggestive": | n/a |
| Marker type: | SNP |
| Analysis type: | Association |
| Model tested: | Mendelian |
| Test base: | Comparison-wise |
| Threshold significance level: | Significant |
 |
P_values | 2.77E-5 | | Dominance effect: | n/a |
| Additive effect: | n/a |
| Associated Gene: | n/a |
| Cis/Trans acting type: |  |
| Links:
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| Extended information: |
|---|
| (none) |
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| QTL Experiment in Brief |
|---|
| Animals: | Animals were Standardbred yearlings. |
| Breeds associated:
|
| Design: | Animals were genotyped using either the Illumina EquineSNP50 or EquineSNP70 chip, with data imputed to 670k data. Genotypes were analyzed for association with tarsal osteochondrosis. Variants in regions of interest were selected for further genotyping in both the discovery population and a validation population. |
| Analysis: | Genome-wide efficient mixed model analysis was performed. |
| Software: | GEMMA, Haploview |
| Notes: | |
| Links: | Edit |
| Reference |
|---|
| Authors: | McCoy AM, Beeson SK, Splan RK, Lykkjen S, Ralston SL, Mickelson JR, McCue ME |
| Affiliation: | Veterinary Population Medicine Department, University of Minnesota, 1365 Gortner Ave., St. Paul, MN, USA |
| Title: | Identification and validation of risk loci for osteochondrosis in standardbreds |
| Journal: | BMC genomics, 2016, 17(1): 41 |
| Links: |
PubMed | Abstract | List all data
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