| QTL Map Information |
|---|
| Chromosome: | 6 |
| QTL Peak Location: | 775.09 (cM) |
| QTL Span: | 775.09-775.09 (cM)
45.6-45.6 (Mbp) |
 |
Upper, "Suggestive": | n/a |
| Upper, "Significant": | n/a |
| Peak: | rs68667247 |
| Lower, "Significant": | n/a |
| Lower, "Suggestive": | n/a |
| Marker type: | SNP |
| Analysis type: | Association |
| Model tested: | Mendelian |
| Test base: | Experiment-wise |
| Threshold significance level: | Significant |
 |
P_values | 0.047 | | Dominance effect: | n/a |
| Additive effect: | n/a |
| Associated Gene: | PLCZ1 (phospholipase C, zeta 1) |
| Cis/Trans acting type: |  |
| Links:
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| Extended information: |
|---|
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| QTL Experiment in Brief |
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| Animals: | Animals were Hanoverian warmblood stallions. |
| Breeds associated:
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| Design: | Animals were genotyped using the Illumina EquineSNP50 BeadChip and analyzed for paternal component of pregnancy rate per estrus cycle. A total of 46,074 SNPs were used for analysis. |
| Analysis: | A mixed linear model was used. |
| Software: | TASSEL, SAS, Haploview, PLINK |
| Notes: | |
| Links: | Edit |
| Reference |
|---|
| Authors: | Schrimpf R, Dierks C, Martinsson G, Sieme H, Distl O |
| Affiliation: | Institute for Animal Breeding and Genetics, University of Veterinary Medicine Hannover, Hannover, Germany |
| Title: | Genome-wide association study identifies phospholipase C zeta 1 (PLCz1) as a stallion fertility locus in Hanoverian warmblood horses |
| Journal: | PloS one, 2014, 9(10): e109675 |
| Links: |
PubMed | Abstract | List all data
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