| QTL Map Information |
|---|
| Chromosome: | 7 |
| QTL Peak Location: | n/a |
| QTL Span: | n/a
|
 |
Upper, "Suggestive": | n/a |
| Upper, "Significant": | n/a |
| Peak: | |
| Lower, "Significant": | n/a |
| Lower, "Suggestive": | n/a |
| Marker type: | CNV |
| Analysis type: | Association |
| Model tested: | n/a |
| Test base: | Genome-wise |
| Threshold significance level: | Significant |
 |
P_values | <0.05 | | Dominance effect: | n/a |
| Additive effect: | n/a |
| Associated Gene: | MFSD12 (major facilitator superfamily domain containing 12) |
| Cis/Trans acting type: |  |
| Links:
Edit |
Map view
|
| Extended information: |
|---|
| (none) |
User inputs on QTL #315794
Add your annotations
Add your comments
Report problems
|
| QTL Experiment in Brief |
|---|
| Animals: | Animals were Shetland Ponies. |
| Breeds associated:
|
| Design: | Animals were genotyped using the Affymetrix Axiom Equine Genotyping Array and GWAS was performed for mushroom coat color dilution. A total of 356K SNPs were used for analysis. |
| Analysis: | A single-locus linear mixed model was used for GWAS. Associations were validated in additional Shetland ponies and screened in four additional breeds. Whole-genome sequencing was performed on one animal to identify potential causative variants. |
| Software: | SVS v8 |
| Notes: | |
| Links: | Edit |
| Reference |
|---|
| Authors: | Tanaka J, Leeb T, Rushton J, Famula TR, Mack M, Jagannathan V, Flury C, Bachmann I, Eberth J, McDonnell SM, Penedo MCT, Bellone RR |
| Affiliation: | Veterinary Genetics Laboratory, School of Veterinary Medicine, University of California, Davis, CA 95616, USA |
| Title: | Frameshift Variant in MFSD12 Explains the Mushroom Coat Color Dilution in Shetland Ponies |
| Journal: | Genes, 2019, 10(10):826 |
| Links: |
PubMed | Abstract | List all data
| Edit |
| Additional Information |
|---|
| Comments: | NC_009150.3:g.2544512dupC |
User inputs on reference #31635058
Add your comments
Note similar findings
Note contradictions
|
