| QTL Map Information |
|---|
| Chromosome: | 20 |
| QTL Peak Location: | n/a |
| QTL Span: | n/a
57.7-57.7 (Mbp) |
 |
Upper, "Suggestive": | n/a |
| Upper, "Significant": | n/a |
| Peak: | rs1148983319 |
| Lower, "Significant": | n/a |
| Lower, "Suggestive": | n/a |
| Marker type: | SNP |
| Analysis type: | Association |
| Model tested: | - |
| Test base: | Genome-wise |
| Threshold significance level: | Significant |
 |
P_values | <0.05 | | Dominance effect: | n/a |
| Additive effect: | n/a |
| Associated Gene: | PTP4A1 (protein tyrosine phosphatase 4A1) |
| Cis/Trans acting type: |  |
| Links:
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| Extended information: |
|---|
| (none) |
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| QTL Experiment in Brief |
|---|
| Animals: | Animals were Lipizzan and Noriker (Noric) horses. |
| Breeds associated:
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| Design: | Animals were genotyped using the Affymetrix Axiom Equine Genotyping Array and GWAS was performed for vitiligo-like depigmentation. A total of 376,219 SNPs were used for analysis. |
| Analysis: | A mixed linear model was used. |
| Software: | GCTA v1.91.6, PLINK v1.07, SAS |
| Notes: | |
| Links: | Edit |
| Reference |
|---|
| Authors: | Druml T, Brem G, Velie B, Lindgren G, Horna M, Ricard A, Grilz-Seger G |
| Affiliation: | Institute of Animal Breeding and Genetics, University of Veterinary sciences Vienna, Veterinärplatz 1, A-1210, Vienna, Austria |
| Title: | Equine vitiligo-like depigmentation in grey horses is related to genes involved in immune response and tumor metastasis |
| Journal: | BMC veterinary research, 2021, 17(1): 336 |
| Links: |
PubMed | Abstract | List all data
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