| QTL Map Information |
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| Chromosome: | 3 |
| QTL Peak Location: | n/a |
| QTL Span: | n/a
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Upper, "Suggestive": | n/a |
| Upper, "Significant": | rs3440670238 |
| Peak: | |
| Lower, "Significant": | rs1139704658 |
| Lower, "Suggestive": | n/a |
| Marker type: | SNP |
| Analysis type: | QTL |
| Model tested: | n/a |
| Test base: | Genome-wise |
| Threshold significance level: | Significant |
 |
P_values | 1.86E-7 | | Dominance effect: | n/a |
| Additive effect: | n/a |
| Associated Gene: | SALL1 (spalt like transcription factor 1) |
| Cis/Trans acting type: |  |
| Links:
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| Extended information: |
|---|
| (none) |
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| QTL Experiment in Brief |
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| Animals: | Animals were male and female chestnut horses from the Quarter Horse, Arabian, and Persian breeds. |
| Breeds associated:
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| Design: | Animals were genotyped using the Affymetrix Equine 670K array, and association analysis was performed based on a ranking of chestnut coat color intensity. A total of 73,667 SNPs were used for analysis. |
| Analysis: | Allelic association to the chestnut shade ranking was performed using a linear function. |
| Software: | PLINK |
| Notes: | |
| Links: | Edit |
| Reference |
|---|
| Authors: | Hammons V, Ribeiro L, Munyard K, Sadeghi R, Miller D, Antczak D, Brooks SA |
| Affiliation: | College of Veterinary Medicine and Biomedical Sciences, Colorado State University, Fort Collins, CO, USA |
| Title: | GWAS Identifies a Region Containing the SALL1 Gene in Variation of Pigmentation Intensity Within the Chestnut Coat Color of Horses |
| Journal: | Journal of Heredity, 2021, 112(5): 443-446 |
| Links: |
PubMed | Abstract | List all data
| Edit |
| Additional Information |
|---|
| Comments: | peak SNP: AX-104109910 |
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