| QTL Map Information |
|---|
| Chromosome: | 18 |
| QTL Peak Location: | n/a |
| QTL Span: | n/a
65.6-65.6 (Mbp) |
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Upper, "Suggestive": | n/a |
| Upper, "Significant": | n/a |
| Peak: | rs395083686 |
| Lower, "Significant": | n/a |
| Lower, "Suggestive": | n/a |
| Marker type: | SNP |
| Analysis type: | Association |
| Model tested: | n/a |
| Test base: | n/a |
| Threshold significance level: | Significant |
 |
P_values | <0.05 | | Dominance effect: | n/a |
| Additive effect: | n/a |
| Associated Gene: | COL3A1 (collagen, type III, alpha 1) |
| Cis/Trans acting type: |  |
| Links:
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| Extended information: |
|---|
| (none) |
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| QTL Experiment in Brief |
|---|
| Animals: | Animals were Thoroughbred racehorses. |
| Breeds associated:
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| Design: | A SNP upstream of COL3A1 was analyzed for association with catastrophic bone fracture risk. |
| Analysis: | Whole-genome sequencing was used to identify novel variants associated with fractures, then allelic discrimination assays were performed on 86 controls and 91 fracture cases. |
| Software: | GCTA, GATK, SPSS v29.0 |
| Notes: | |
| Links: | Edit |
| Reference |
|---|
| Authors: | Palomino Lago E, Baird A, Blott SC, McPhail RE, Ross AC, Durward-Akhurst SA, Guest DJ |
| Affiliation: | Department of Clinical Sciences and Services, The Royal Veterinary College, Hawkshead Lane, North Mymms, Hatfield AL9 7TA, UK |
| Title: | A Functional Single-Nucleotide Polymorphism Upstream of the Collagen Type III Gene Is Associated with Catastrophic Fracture Risk in Thoroughbred Horses |
| Journal: | Animals : an open access journal from MDPI, 2023, 14(1):116 |
| Links: |
PubMed | Abstract | List all data
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