| QTL Map Information |
|---|
| Chromosome: | 12 |
| QTL Peak Location: | n/a |
| QTL Span: | n/a
1.1-1.1 (Mbp) |
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Upper, "Suggestive": | n/a |
| Upper, "Significant": | n/a |
| Peak: | rs396043325 |
| Lower, "Significant": | n/a |
| Lower, "Suggestive": | n/a |
| Marker type: | SNP |
| Analysis type: | Association |
| Model tested: | n/a |
| Test base: | Comparison-wise |
| Threshold significance level: | Significant |
 |
P_values | 2.09E-6 | | Dominance effect: | n/a |
| Additive effect: | n/a |
| Associated Gene: | n/a |
| Cis/Trans acting type: |  |
| Links:
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| Extended information: |
|---|
| (none) |
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| QTL Experiment in Brief |
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| Animals: | Animals were Franches-Montagnes stallions. |
| Breeds associated:
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| Design: | Animals were genotyped using either the Axiom Equine Genotyping Array or the Illumina Equine SNP50 Beadchip, with data imputed to sequence level, and GWAS was performed for semen traits. A total of 335,494 SNPs were used for GWAS. |
| Analysis: | GWAS were performed using a polygenic model approach. |
| Software: | PLINK, GenABEL in R, GCTA |
| Notes: | |
| Links: | Edit |
| Reference |
|---|
| Authors: | Gmel AI, Burger D, Neuditschko M |
| Affiliation: | Animal GenoPhenomics, Agroscope, Route de la Tioleyre 4, 1725 Posieux, Switzerland |
| Title: | A Novel QTL and a Candidate Gene Are Associated with the Progressive Motility of Franches-Montagnes Stallion Spermatozoa after Thaw |
| Journal: | Genes, 2021, 12(10) |
| Links: |
PubMed | Abstract | List all data
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