| QTL Map Information |
|---|
| Chromosome: | 3 |
| QTL Peak Location: | 338.16 (cM) |
| QTL Span: | 338.16-338.16 (cM)
85.7-85.7 (Mbp) |
 |
Upper, "Suggestive": | n/a |
| Upper, "Significant": | n/a |
| Peak: | rs68486214 |
| Lower, "Significant": | n/a |
| Lower, "Suggestive": | n/a |
| Marker type: | SNP |
| Analysis type: | Association |
| Model tested: | Mendelian |
| Test base: | Comparison-wise |
| Threshold significance level: | Significant |
 |
P_values | 4.15E-06 | | Dominance effect: | n/a |
| Additive effect: | n/a |
| Associated Gene: | n/a |
| Cis/Trans acting type: |  |
| Links:
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| Extended information: |
|---|
| (none) |
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| QTL Experiment in Brief |
|---|
| Animals: | Animals were Welsh, Connemara, Highland, and Fell ponies. |
| Breeds associated:
|
| Design: | Animals were genotyped using the Illumina EquineSNP50 Infinium BeadChip and analyzed for body height. A total of 18,950 (all breeds) or 14,832 (Welsh only) were used for analysis. |
| Analysis: | Two separate GWAS were performed, one using all four breeds, and one using Welsh ponies and cobs only. |
| Software: | GenABEL in R |
| Notes: | |
| Links: | Edit |
| Reference |
|---|
| Authors: | Skujina I, Winton CL, Hegarty MJ, McMahon R, Nash DM, Davies Morel MCG, McEwan NR |
| Affiliation: | c School of Pharmacy and Life Sciences, Robert Gordon University, Garthdee Road, Aberdeen, Scotland, AB10 7GJ |
| Title: | Detecting genetic regions associated with height in the native ponies of the British Isles by using high density SNP genotyping |
| Journal: | Genome, 2018, 61(10): 767-770 |
| Links: |
PubMed | Abstract | List all data
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