| QTL Map Information |
|---|
| Chromosome: | 6 |
| QTL Peak Location: | 223.86 (cM) |
| QTL Span: | 223.86-223.86 (cM)
12.9-12.9 (Mbp) |
 |
Upper, "Suggestive": | n/a |
| Upper, "Significant": | n/a |
| Peak: | rs68647876 |
| Lower, "Significant": | n/a |
| Lower, "Suggestive": | n/a |
| Marker type: | SNP |
| Analysis type: | Association |
| Model tested: | Mendelian |
| Test base: | Experiment-wise |
| Threshold significance level: | Significant |
 |
P_values | <0.05 | | Dominance effect: | n/a |
| Additive effect: | n/a |
| Associated Gene: | n/a |
| Cis/Trans acting type: |  |
| Links:
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| Extended information: |
|---|
| (none) |
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| QTL Experiment in Brief |
|---|
| Animals: | Animals were Hokkaido Native Horses, a native Japanese breed. |
| Breeds associated:
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| Design: | Animals were genotyped using the Illumina Equine 70K BeadChip and analyzed for ability to display alternative gaits. A total of 38,747 and 37,178 SNPs were used for GWAS-1 and GWAS-2, respectively. |
| Analysis: | Two GWAS were performed--first, for all genotyped animals, then for 76 animals with AA genotype for DMRT:Ser301Ter. |
| Software: | Beagle, rrBLUP in R |
| Notes: | |
| Links: | Edit |
| Reference |
|---|
| Authors: | Amano T, Onogi A, Yamada F, Kawai M, Shirai K, Ueda J |
| Affiliation: | Laboratory of Animal Genetics, Department of Sustainable Agriculture, College of Agriculture, Food and Environment Sciences, Rakuno Gakuen University, Hokkaido, 069-0836, Japan |
| Title: | Genome-wide association mapping and examination of possible maternal effect for the pace trait of horses |
| Journal: | Animal genetics, 2018, 49(5):461-463 |
| Links: |
PubMed | Abstract | List all data
| Edit |
| Additional Information |
|---|
| Comments: | In animals with AA for DMRT3:Ser301Ter |
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