| QTL Map Information |
|---|
| Chromosome: | 16 |
| QTL Peak Location: | 130.80 (cM) |
| QTL Span: | 130.80-130.80 (cM)
21.6-21.6 (Mbp) |
 |
Upper, "Suggestive": | n/a |
| Upper, "Significant": | n/a |
| Peak: | rs69060482 |
| Lower, "Significant": | n/a |
| Lower, "Suggestive": | n/a |
| Marker type: | SNP |
| Analysis type: | Association |
| Model tested: | Mendelian |
| Test base: | Genome-wise |
| Threshold significance level: | Significant |
 |
VARIANCE | 3.1% | | P_values | 0.05 | | Dominance effect: | n/a |
| Additive effect: | n/a |
| Associated Gene: | MITF (melanogenesis associated transcription factor) |
| Cis/Trans acting type: |  |
| Links:
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| Extended information: |
|---|
| (none) |
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| QTL Experiment in Brief |
|---|
| Animals: | Animals were Spanish Purebred and Menorca Purebred horses.
Animal breed (IDs) involved: |
| Breeds associated:
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| Design: | Animals were genotyped for eight variants in the KIT, MITF, and PAX3 genes and analyzed for extent of white markings. |
| Analysis: | Maximum-likelihood chi square test, logistic regression model, and ridge regression analyses were used. |
| Software: | SAS |
| Notes: | |
| Links: | Edit |
| Reference |
|---|
| Authors: | Negro S, Imsland F, Valera M, Molina A, Solé M, Andersson L |
| Affiliation: | Department of Veterinary Integrative Biosciences, Texas A&M University, College Station, TX, 77843, USA |
| Title: | Association analysis of KIT, MITF, and PAX3 variants with white markings in Spanish horses |
| Journal: | Animal genetics, 2017, 48(3):349-352 |
| Links: |
PubMed | Abstract | List all data
| Edit |
| Additional Information |
|---|
| Comments: | Ridge regression procedure |
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