| QTL Map Information |
|---|
| Chromosome: | 5 |
| QTL Peak Location: | 54.52 (cM) |
| QTL Span: | 54.29-54.74 (cM)
5.6-5.7 (Mbp) |
 |
Upper, "Suggestive": | n/a |
| Upper, "Significant": | n/a |
| Peak: | |
| Lower, "Significant": | n/a |
| Lower, "Suggestive": | n/a |
| Marker type: | CNV |
| Analysis type: | Association |
| Model tested: | Mendelian |
| Test base: | Genome-wise |
| Threshold significance level: | Suggestive |
 |
P_values | 0.06 | | Dominance effect: | n/a |
| Additive effect: | n/a |
| Associated Gene: | n/a |
| Cis/Trans acting type: |  |
| Links:
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| Extended information: |
|---|
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| QTL Experiment in Brief |
|---|
| Animals: | Animals were severely RAO-affected and healthy control horses of various breeds. |
| Breeds associated:
n/a
|
| Design: | Cases and controls were used for CNV discovery by array comparative genomic hybridization (aCGH). Follow-up tests were performed using qPCR and RAO-exclusive variants were subjected to further analysis. |
| Analysis: | Novel CNVs were analyzed for genotype-phenotype association using the parametric Student's t-test |
| Software: | R software |
| Notes: | |
| Links: | Edit |
| Reference |
|---|
| Authors: | Ghosh S, Das P J, McQueen C M, Gerber V, Swiderski C E, Lavoie J-P, Chowdhary B P, Raudsepp T |
| Affiliation: | Department of Veterinary Integrative Biosciences, Texas A&M University, College Station, TX, 77843, USA |
| Title: | Analysis of genomic copy number variation in equine recurrent airway obstruction (heaves) |
| Journal: | Animal genetics, 2016, 47(3): 334-44 |
| Links: |
PubMed | Abstract | List all data
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