| QTL Map Information |
|---|
| Chromosome: | 14 |
| QTL Peak Location: | 5.31 (cM) |
| QTL Span: | 5.31-5.31 (cM)
2.9-2.9 (Mbp) |
 |
Upper, "Suggestive": | n/a |
| Upper, "Significant": | n/a |
| Peak: | rs41624797 |
| Lower, "Significant": | n/a |
| Lower, "Suggestive": | n/a |
| Marker type: | SNP |
| Analysis type: | Association |
| Model tested: | Mendelian |
| Test base: | Genome-wise |
| Threshold significance level: | Significant |
 |
P_values | <0.05 | | Dominance effect: | n/a |
| Additive effect: | n/a |
| Associated Gene: | PTK2 (protein tyrosine kinase 2) |
| Cis/Trans acting type: |  |
| Links:
NCBI GeneDB | Edit |
Map view
|
| Extended information: |
|---|
| (none) |
User inputs on QTL #71151
Add your annotations
Add your comments
Report problems
|
| QTL Experiment in Brief |
|---|
| Animals: | Animals were Chinese Holstein cattle.
Animal breed (IDs) involved: |
| Breeds associated:
|
| Design: | Animals were genotyped for two SNPs identified in a previous GWAS, as well as an additional 13 SNPs in the PTK2 gene, and analyzed for milk production traits. |
| Analysis: | A linear mixed regression model was used. |
| Software: | Haploview |
| Notes: | |
| Links: | Edit |
| Reference |
|---|
| Authors: | Wang H, Jiang L, Liu X, Yang J, Wei J, Xu J, Zhang Q, Liu JF |
| Affiliation: | Key Laboratory of Animal Genetics, Breeding and Reproduction, Ministry of Agriculture, National Engineering laboratory for Animal Breeding, College of Animal Science and Technology, China Agricultural University, Beijing, China |
| Title: | A post-GWAS replication study confirming the PTK2 gene associated with milk production traits in Chinese Holstein |
| Journal: | PloS one, 2013, 8(12): e83625 |
| Links: |
PubMed | Abstract | List all data
| Edit |
| Additional Information |
|---|
| Comments: | EBV |
User inputs on reference #24386238
Add your comments
Note similar findings
Note contradictions
|
