| QTL Map Information |
|---|
| Chromosome: | 2 |
| QTL Peak Location: | 92.07 (cM) |
| QTL Span: | 92.07-92.07 (cM)
96.9-96.9 (Mbp) |
 |
Upper, "Suggestive": | n/a |
| Upper, "Significant": | n/a |
| Peak: | rs133244148 |
| Lower, "Significant": | n/a |
| Lower, "Suggestive": | n/a |
| Marker type: | SNP |
| Analysis type: | Association |
| Model tested: | Mendelian |
| Test base: | Experiment-wise |
| Threshold significance level: | Significant |
 |
P_values | <0.05 | | Dominance effect: | n/a |
| Additive effect: | n/a |
| Associated Gene: | n/a |
| Cis/Trans acting type: |  |
| Links:
NCBI GeneDB | Edit |
Map view
|
| Extended information: |
|---|
| (none) |
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| QTL Experiment in Brief |
|---|
| Animals: | Animals were Japanese Black cattle. |
| Breeds associated:
|
| Design: | Animals were genotyped using the Illumina BovineSNP50 BeadChip and analyzed for days open. A total of 33,303 SNPs were used for analysis and genotypes were imputed using phased haplotype data inferred from 586,812 SNPs in a reference group. |
| Analysis: | A mixed linear model was used. |
| Software: | GEMMA, BEAGLE |
| Notes: | |
| Links: | Edit |
| Reference |
|---|
| Authors: | Sasaki S, Ibi T, Kojima T, Sugimoto Y |
| Affiliation: | Shirakawa Institute of Animal Genetics, Japan Livestock Technology Association, Odakura, Nishigo, Fukushima, 961-8061, Japan |
| Title: | A genome-wide association study reveals a quantitative trait locus for days open on chromosome 2 in Japanese Black cattle |
| Journal: | Animal genetics, 2016, 47(1):102-5 |
| Links: |
PubMed | Abstract | List all data
| Edit |
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