| QTL Map Information |
|---|
| Chromosome: | 1 |
| QTL Peak Location: | 131.26 (cM) |
| QTL Span: | 131.26-131.26 (cM)
136.0-136.0 (Mbp) |
 |
Upper, "Suggestive": | n/a |
| Upper, "Significant": | n/a |
| Peak: | rs110499586 |
| Lower, "Significant": | n/a |
| Lower, "Suggestive": | n/a |
| Marker type: | SNP |
| Analysis type: | Association |
| Model tested: | Mendelian |
| Test base: | Comparison-wise |
| Threshold significance level: | Significant |
 |
P_values | 1.89E-5 | | Dominance effect: | n/a |
| Additive effect: | n/a |
| Associated Gene: | n/a |
| Cis/Trans acting type: |  |
| Links:
NCBI GeneDB | Edit |
Map view
|
| Extended information: |
|---|
| (none) |
User inputs on QTL #57463
Add your annotations
Add your comments
Report problems
|
| QTL Experiment in Brief |
|---|
| Animals: | Animals were German Holstein cattle. |
| Breeds associated:
|
| Design: | Animals were genotyped using the Illumina Bovine SNP50 BeadChip v1 or v2 and analyzed for MAP incidence using fecal culture and four commercial ELISA kits. A total of 40,079 SNPs were used for analysis. |
| Analysis: | GWAS was performed using the 'qtscore' function for a binary trait. |
| Software: | GenABEL in R |
| Notes: | Chromosome assignment for significant markers differs from positions reported in dbSNP; dbSNP locations were used. |
| Links: | Edit |
| Reference |
|---|
| Authors: | Küpper J, Brandt H, Donat K, Erhardt G |
| Affiliation: | Institut für Tierzucht und Haustiergenetik,Justus-Liebig-Universität,Ludwigstraße 21b,35390 Gießen,Germany |
| Title: | Phenotype definition is a main point in genome-wide association studies for bovine Mycobacterium avium ssp. paratuberculosis infection status |
| Journal: | Animal : an international journal of animal bioscience, 2014, 8(10): 1586-93 |
| Links: |
PubMed | Abstract | List all data
| Edit |
| Additional Information |
|---|
| Comments: | Animals positive in one ELISA test |
User inputs on reference #25231280
Add your comments
Note similar findings
Note contradictions
|
