| QTL Map Information |
|---|
| Chromosome: | 2 |
| QTL Peak Location: | 58.03 (cM) |
| QTL Span: | 58.03-58.03 (cM)
61.0-61.0 (Mbp) |
 |
Upper, "Suggestive": | n/a |
| Upper, "Significant": | n/a |
| Peak: | rs110114563 |
| Lower, "Significant": | n/a |
| Lower, "Suggestive": | n/a |
| Marker type: | SNP |
| Analysis type: | Association |
| Model tested: | Mendelian |
| Test base: | Comparison-wise |
| Threshold significance level: | Significant |
 |
P_values | 0.0107 | | Dominance effect: | n/a |
| Additive effect: | n/a |
| Associated Gene: | n/a |
| Cis/Trans acting type: |  |
| Links:
NCBI GeneDB | Edit |
Map view
|
| Extended information: |
|---|
| (none) |
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| QTL Experiment in Brief |
|---|
| Animals: | Animals were Angus, Hereford, Murray Grey, Shorthorn, Brahman, Belmont Red, and Santa Gertrudis cattle. |
| Breeds associated:
|
| Design: | Animals were genotyped using the Illumina BovineSNP50 BeadChip and analyzed for peak shear force and intramuscular fat. Three-SNP haplotypes were tested for association with traits. |
| Analysis: | A restricted maximum likelihood (REML) mixed model was used. |
| Software: | ASReml v3.0 |
| Notes: | |
| Links: | Edit |
| Reference |
|---|
| Authors: | Barendse W |
| Affiliation: | Cooperative Research Centre for Beef Genetic Technologies, Commonwealth Scientific and Industrial Research Organization, St. Lucia, Queensland, Australia |
| Title: | Haplotype Analysis Improved Evidence for Candidate Genes for Intramuscular Fat Percentage from a Genome Wide Association Study of Cattle |
| Journal: | PLoS ONE, 2011, 6(12): e29601 |
| Links: |
PubMed | Abstract | List all data
| Edit |
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