| QTL Map Information |
|---|
| Chromosome: | 20 |
| QTL Peak Location: | 45.53 (cM) |
| QTL Span: | 45.53-45.53 (cM)
39.3-39.3 (Mbp) |
 |
Upper, "Suggestive": | n/a |
| Upper, "Significant": | n/a |
| Peak: | rs137210911 |
| Lower, "Significant": | n/a |
| Lower, "Suggestive": | n/a |
| Marker type: | SNP |
| Analysis type: | Association |
| Model tested: | Mendelian |
| Test base: | Comparison-wise |
| Threshold significance level: | Significant |
 |
P_values | 1.67E-8 | | Dominance effect: | n/a |
| Additive effect: | n/a |
| Associated Gene: | n/a |
| Cis/Trans acting type: |  |
| Links:
NCBI GeneDB | Edit |
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| Extended information: |
|---|
| (none) |
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| QTL Experiment in Brief |
|---|
| Animals: | Animals were slick-haired Senepol, Carora, and Romosinuano, tropical cross-bred lines (Senepol x Angus, Senepol x Holstein, and Romosinuano x Angus), and six ancestral non-slick-haired breeds (Angus, Red Poll, N'Dama, Holstein, Brown Swiss, and East |
| Breeds associated:
n/a
|
| Design: | Animals were genotyped using the Illumina BovineHD BeadChip and analyzed for hair coat type. A total of 639,663 SNPs were used for GWAS. |
| Analysis: | A case/control analysis approach using permutation testing was employed. |
| Software: | EMMAX, PLINK, Haploview, R software |
| Notes: | Haplotype data not entered due to lack of SNP IDs. |
| Links: | Edit |
| Reference |
|---|
| Authors: | Huson HJ, Kim ES, Godfrey RW, Olson TA, McClure MC, Chase CC, Rizzi R, O'Brien AMP, Van Tassell P, Garcia JF, Sonstegard TS |
| Affiliation: | Bovine Functional Genomics Laboratory, United States Department of Agriculture, Agricultural Research Services Beltsville, MD, USA |
| Title: | Genome-wide association study and ancestral origins of the slick-hair coat in tropically adapted cattle |
| Journal: | Frontiers in genetics, 2014, 5: 101 |
| Links: |
PubMed | Abstract | List all data
| Edit |
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