| QTL Map Information |
|---|
| Chromosome: | 23 |
| QTL Peak Location: | n/a |
| QTL Span: | n/a
36.5-36.5 (Mbp) |
 |
Upper, "Suggestive": | n/a |
| Upper, "Significant": | n/a |
| Peak: | rs109806456 |
| Lower, "Significant": | n/a |
| Lower, "Suggestive": | n/a |
| Marker type: | SNP |
| Analysis type: | Association |
| Model tested: | - |
| Test base: | Comparison-wise |
| Threshold significance level: | Significant |
 |
P_values | 5.6E-5 | | Dominance effect: | n/a |
| Additive effect: | n/a |
| Associated Gene: | n/a |
| Cis/Trans acting type: |  |
| Links:
Edit |
Map view
|
| Extended information: |
|---|
| (none) |
User inputs on QTL #301332
Add your annotations
Add your comments
Report problems
|
| QTL Experiment in Brief |
|---|
| Animals: | Animals were Russian Holstein cattle. |
| Breeds associated:
|
| Design: | Animals were genotyped using the GeneSeek Genomic Profiler Bovine 100K DNA chip and GWAS was performed for left displaced abomasum. A total of 85,605 SNPs were used for analysis. |
| Analysis: | Three statistical models were used for GWAS: general linear model, mixed linear model, and fixed and random model circulating probability unification (FarmCPU) |
| Software: | PLINK 1.90, GAPIT v.3, rMVP in R, qqman v.0.1.9, qqplot2 v.3.4.4 |
| Notes: | |
| Links: | Edit |
| Reference |
|---|
| Authors: | Plemyashov K, Krutikova A, Belikova A, Kuznetsova T, Semenov B |
| Affiliation: | Faculty of Veterinary Medicine, St. Petersburg State University of Veterinary Medicine, 196084 St. Petersburg, Russia |
| Title: | Genome-Wide Association Study (GWAS) for Left Displaced Abomasum in Highly Productive Russian Holstein Cattle |
| Journal: | Animals : an open access journal from MDPI, 2024, 14(19):2795 |
| Links: |
PubMed | Abstract | List all data
| Edit |
User inputs on reference #39409743
Add your comments
Note similar findings
Note contradictions
|
