| QTL Map Information |
|---|
| Chromosome: | 22 |
| QTL Peak Location: | n/a |
| QTL Span: | n/a
42.7-42.7 (Mbp) |
 |
Upper, "Suggestive": | n/a |
| Upper, "Significant": | n/a |
| Peak: | rs42598849 |
| Lower, "Significant": | n/a |
| Lower, "Suggestive": | n/a |
| Marker type: | SNP |
| Analysis type: | Association |
| Model tested: | - |
| Test base: | Comparison-wise |
| Threshold significance level: | Significant |
 |
P_values | 0.00000002511886 | | Dominance effect: | n/a |
| Additive effect: | n/a |
| Associated Gene: | n/a |
| Cis/Trans acting type: |  |
| Links:
Edit |
Map view
|
| Extended information: |
|---|
| (none) |
User inputs on QTL #301280
Add your annotations
Add your comments
Report problems
|
| QTL Experiment in Brief |
|---|
| Animals: | Animals were Holstein-Friesian cows. |
| Breeds associated:
|
| Design: | Animals were genotyped using the Illumina BovineSNP50 BeadChip and GWAS was performed for milk somatic cell score in the first two lactations. A total of 43,044 SNPs were used for analysis. |
| Analysis: | Two methods were used for GWAS: fixed and random model circulating probability unification (FarmCPU) and Bayesian information and linkage disequilibrium iteratively nested keyway (BLINK). |
| Software: | PLINK v1.9, GAPIT in R v3.0 |
| Notes: | |
| Links: | Edit |
| Reference |
|---|
| Authors: | Ashja A, Zorc M, Dovc P |
| Affiliation: | Biotechnical Faculty, University of Ljubljana, 1000 Ljubljana, Slovenia. |
| Title: | Genome-Wide Association Study for Milk Somatic Cell Score in Holstein Friesian Cows in Slovenia. |
| Journal: | Animals : an open access journal from MDPI, 2024, 14(18):2713 |
| Links: |
PubMed | Abstract | List all data
| Edit |
| Additional Information |
|---|
| Comments: | BLINK model |
User inputs on reference #39335302
Add your comments
Note similar findings
Note contradictions
|
