| QTL Map Information |
|---|
| Chromosome: | 17 |
| QTL Peak Location: | n/a |
| QTL Span: | n/a
44.7-44.7 (Mbp) |
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Upper, "Suggestive": | n/a |
| Upper, "Significant": | n/a |
| Peak: | rs109340659 |
| Lower, "Significant": | n/a |
| Lower, "Suggestive": | n/a |
| Marker type: | SNP |
| Analysis type: | Association |
| Model tested: | n/a |
| Test base: | Experiment-wise |
| Threshold significance level: | Significant |
 |
FDR | <0.05 | | Dominance effect: | n/a |
| Additive effect: | n/a |
| Associated Gene: | n/a |
| Cis/Trans acting type: |  |
| Links:
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| Extended information: |
|---|
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| QTL Experiment in Brief |
|---|
| Animals: | Animals were dairy cattle (Holstein Friesian, Jersey, and crossbred) in Bengaluru, India. |
| Breeds associated:
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| Design: | Animals were genotyped using either the Illumina Bovine 50K SNP BeadChip v2 or the Illumina Bovine 62K SNP BeadChip. After imputation to 62K, GWAS were performed for milk production traits. A total of 42,199 SNPs were used for analysis. |
| Analysis: | The average information restricted maximum likelihood (AIREML) algorithm was used. |
| Software: | BLUPF90, AIREMLF90, PreGSf90, PLINK |
| Notes: | |
| Links: | Edit |
| Reference |
|---|
| Authors: | Velayudhan SM, Yin T, Alam S, Brügemann K, Sejian V, Bhatta R, Schlecht E, König S |
| Affiliation: | Institute of Animal Breeding and Genetics, Justus-Liebig-University Gießen, Ludwigstraße 21 b, 35390 Gießen, Germany |
| Title: | Unraveling the Genomic Association for Milk Production Traits and Signatures of Selection of Cattle in a Harsh Tropical Environment |
| Journal: | Biology, 2023, 12(12):1483 |
| Links: |
PubMed | Abstract | List all data
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