| QTL Map Information |
|---|
| Chromosome: | 2 |
| QTL Peak Location: | n/a |
| QTL Span: | n/a
107.2-107.2 (Mbp) |
 |
Upper, "Suggestive": | n/a |
| Upper, "Significant": | n/a |
| Peak: | rs109446852 |
| Lower, "Significant": | n/a |
| Lower, "Suggestive": | n/a |
| Marker type: | SNP |
| Analysis type: | Association |
| Model tested: | n/a |
| Test base: | Genome-wise |
| Threshold significance level: | Significant |
 |
P_values | <0.05 | | Dominance effect: | n/a |
| Additive effect: | n/a |
| Associated Gene: | ZFAND2B (zinc finger AN1-type containing 2B) |
| Cis/Trans acting type: |  |
| Links:
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| Extended information: |
|---|
| (none) |
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| QTL Experiment in Brief |
|---|
| Animals: | Animals were Hanwoo cattle. |
| Breeds associated:
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| Design: | Animals were genotyped using the Illumina BovineSNP50 BeadChip, with data imputed to 777k then to sequence level, and GWAS were performed for carcass traits. A total of 10,443,247 SNPs were used for anlaysis. |
| Analysis: | A mixed linear model was used for GWAS. |
| Software: | GCTA, PLINK 1.9, minimac3, SnpEff, PHASE v2.1.1, BLUPF90 |
| Notes: | |
| Links: | Edit |
| Reference |
|---|
| Authors: | Lee DJ, Kim Y, Dinh PTN, Chung Y, Lee D, Kim Y, Lee SH, Choi I, Lee SH |
| Affiliation: | Division of Animal & Dairy Science, Chungnam National University, Daejeon 34134, Republic of Korea |
| Title: | Identification of Missense Variants Affecting Carcass Traits for Hanwoo Precision Breeding |
| Journal: | Genes, 2023, 14(10):1839 |
| Links: |
PubMed | Abstract | List all data
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