| QTL Map Information |
|---|
| Chromosome: | 18 |
| QTL Peak Location: | n/a |
| QTL Span: | n/a
|
 |
Upper, "Suggestive": | n/a |
| Upper, "Significant": | rs43743318 |
| Peak: | |
| Lower, "Significant": | rs132997053 |
| Lower, "Suggestive": | n/a |
| Marker type: | SNP |
| Analysis type: | QTL |
| Model tested: | n/a |
| Test base: | n/a |
| Threshold significance level: | Significant |
 |
VARIANCE | 1.32% | | Dominance effect: | n/a |
| Additive effect: | n/a |
| Associated Gene: | n/a |
| Cis/Trans acting type: |  |
| Links:
Edit |
Map view
|
| Extended information: |
|---|
| (none) |
User inputs on QTL #285962
Add your annotations
Add your comments
Report problems
|
| QTL Experiment in Brief |
|---|
| Animals: | Animals were Nellore cattle. |
| Breeds associated:
|
| Design: | Animals were genotyped using either the Illumina BovineHD BeadChip or a medium-density panel (with data imputed to HD), and GWAS was performed for incidence of feet and legs malformation. A total of 461,057 SNPs were used for anlaysis. |
| Analysis: | The phenotypes of FLM were used as dependent variables in a single-trait threshold animal model. SNP effects were estimated by the weighted single-step genomic BLUP (WssGBLUP) method with two iterations. |
| Software: | THRGIBBS1F90, FImpute v3, QCF90, BLUPF90, POSTGSF90 |
| Notes: | |
| Links: | Edit |
| Reference |
|---|
| Authors: | Silva TL, Gondro C, Fonseca PAS, da Silva DA, Vargas G, Neves HHR, Carvalho Filho I, Teixeira CS, de Albuquerque LG, Carvalheiro R |
| Affiliation: | Department of Animal Science, School of Agricultural and Veterinarian Sciences, São Paulo State University (Unesp), Jaboticabal, SP, Brazil |
| Title: | Feet and legs malformation in Nellore cattle: genetic analysis and prioritization of GWAS results |
| Journal: | Frontiers in genetics, 2023, 14: 1118308 |
| Links: |
PubMed | Abstract | List all data
| Edit |
User inputs on reference #37662838
Add your comments
Note similar findings
Note contradictions
|
