Release 56
(Apr 24, 2025)

QTL 261867 Description:

 Trait Information
Trait name: Somatic cell score Vertebrate Trait Ontology: Milk somatic cell quantity
Reported name: (n/a) Product Trait Ontology: Milk somatic cell count
Symbol: SCS Clinical Measurement Ontology: Milk somatic cell score
 QTL Map Information
Chromosome:14
QTL Peak Location:n/a
QTL Span:n/a
38.0-38.0 (Mbp)
Upper, "Suggestive":n/a
Upper, "Significant":n/a
Peak:rs110495423
Lower, "Significant":n/a
Lower, "Suggestive":n/a
Marker type:SNP
Analysis type:Association
Model tested:n/a
Test base:Genome-wise
Threshold significance level:Significant
P_values<0.05
Dominance effect:n/a
Additive effect:n/a
Associated Gene:n/a
Cis/Trans acting type:
Links:   Edit  |   Map view

 Extended information:
(none)

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  •  QTL Experiment in Brief
    Animals:Animals were Holstein cows in China.
     Breeds associated:
    Design:Animals were genotyped using the Illumina BovineHD100k BeadChip, and GWAS were performed for milk production, somatic cell score, and body conformation traits. A total of 83,446 SNPs were used for analysis.
    Analysis:Single-step genomic best linear unbiased prediction (ssGBLUP) and the FarmCPU method were used.
    Software:PLINK v1.9, Haploview, DMU
    Notes: 
    Links:Edit

     Reference
    Authors:Wang P, Li X, Zhu Y, Wei J, Zhang C, Kong Q, Nie X, Zhang Q, Wang Z
    Affiliation:Heilongjiang Animal Husbandry Service, Harbin, China
    Title:Genome-wide association analysis of milk production, somatic cell score, and body conformation traits in Holstein cows
    Journal:Frontiers in Veterinary Science, 2022, 9:932034
    Links:  PubMed  |  Abstract   |  List all data   |  Edit  
    User inputs on reference #36268046
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  • Cite this Data:

    Animal QTLdb: QTL261867 was published in 2022, and was curated into QTLdb on 2022-11-16. DBxREF link to this data: https://www.animalgenome.org/QTLdb/q?id=QTL_ID:261867

     

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