| QTL Map Information |
|---|
| Chromosome: | 10 |
| QTL Peak Location: | n/a |
| QTL Span: | n/a
|
 |
Upper, "Suggestive": | n/a |
| Upper, "Significant": | rs109234145 |
| Peak: | |
| Lower, "Significant": | rs136862672 |
| Lower, "Suggestive": | n/a |
| Marker type: | SNP |
| Analysis type: | QTL |
| Model tested: | n/a |
| Test base: | n/a |
| Threshold significance level: | Significant |
 |
VARIANCE | 1.3345% | | Dominance effect: | n/a |
| Additive effect: | n/a |
| Associated Gene: | n/a |
| Cis/Trans acting type: |  |
| Links:
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|
| Extended information: |
|---|
| (none) |
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| QTL Experiment in Brief |
|---|
| Animals: | Animals were Nellore cattle. |
| Breeds associated:
n/a
|
| Design: | Animals were genotyped using the Illumina BovineHD BeadChip or the GeneSeek Genomic Profiler Indicus HD chip, with data imputed to HD, and GWAS was performed for preweaning calf mortality. A total of 410,936 SNPs were used for analysis. |
| Analysis: | A weighted single-step approach was used for GWAS. |
| Software: | THRGIBBS1F90, POSTGSF90, qqman in R |
| Notes: | |
| Links: | Edit |
| Reference |
|---|
| Authors: | Marín-Garzón NA, Magalhães AFB, Schmidt PI, Serna M, Fonseca LFS, Salatta BM, Frezarim GB, Fernandes-Júnior GA, Bresolin T, Carvalheiro R, Albuquerque LG |
| Affiliation: | São Paulo State University (Unesp), College of Agricultural and Veterinarian Sciences, Via de Acesso Professor Paulo Donato Castelane Castellane S/N - Vila Industrial, 14884-900 Jaboticabal, SP, Brazil |
| Title: | Genome-wide scan reveals genomic regions and candidate genes underlying direct and maternal effects of preweaning calf mortality in Nellore cattle |
| Journal: | Genomics, 2021, 113(3): 1386-1395 |
| Links: |
PubMed | Abstract | List all data
| Edit |
| Additional Information |
|---|
| Comments: | direct genetic effect |
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