Release 56
(Apr 24, 2025)

QTL 256210 Description:

 Trait Information
Trait name: M. paratuberculosis susceptibility Vertebrate Trait Ontology: n/a
Reported name: (n/a) Product Trait Ontology: n/a
Symbol: MPARA Clinical Measurement Ontology: Disease process measurement
 QTL Map Information
Chromosome:2
QTL Peak Location:n/a
QTL Span:n/a
106.4-106.4 (Mbp)
Upper, "Suggestive":n/a
Upper, "Significant":n/a
Peak:rs109453173
Lower, "Significant":n/a
Lower, "Suggestive":n/a
Marker type:SNP
Analysis type:Association
Model tested:n/a
Test base:n/a
Threshold significance level:Significant
P_values0.0059
Dominance effect:n/a
Additive effect:n/a
Associated Gene:SLC11A1 (solute carrier family 11 (proton-coupled divalent metal ion transporters), member 1)
Cis/Trans acting type:
Links:   Edit  |   Map view

 Extended information:
(none)

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  •  QTL Experiment in Brief
    Animals:Animals were Sahiwal, Gir, Tharparkar, Kankrej, and Frieswal cattle.
     Breeds associated:
    Design:Animals were genotyped for a total of 10 SNPs in the IFNG, SLC11A1, ANKRA2, and PGLYRP1 genes, and association analysis was performed for susceptibility to MAP infection.
    Analysis:Univariate logistic regression analysis was performed.
    Software:SAS 9.3
    Notes: 
    Links:Edit

     Reference
    Authors:Gopi B, Vir Singh R, Kumar S, Kumar S, Chauhan A, Sonwane A, Kumar A, Bharati J, Vir Singh S
    Affiliation:Division of Animal Genetics, ICAR- Indian Veterinary Research Institute, Izatnagar, 243122, Bareilly, UP, India
    Title:Effect of selected single nucleotide polymorphisms in SLC11A1, ANKRA2, IFNG and PGLYRP1 genes on host susceptibility to Mycobacterium avium subspecies paratuberculosis infection in Indian cattle
    Journal:Veterinary research communications, 2022, 46(1): 209-221
    Links:  PubMed  |  Abstract   |  List all data   |  Edit  
    User inputs on reference #34718924
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  • Cite this Data:

    Animal QTLdb: QTL256210 was published in 2022, and was curated into QTLdb on 2022-02-16. DBxREF link to this data: https://www.animalgenome.org/QTLdb/q?id=QTL_ID:256210

     

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