Release 56
(Apr 24, 2025)

QTL 25267 Description:

 Trait Information
Trait name: Somatic cell score Vertebrate Trait Ontology: Milk somatic cell quantity
Reported name: Somatic cell score (DYD) Product Trait Ontology: Milk somatic cell count
Symbol: SCS Clinical Measurement Ontology: Milk somatic cell score
 QTL Map Information
Chromosome:27
QTL Peak Location:6.3 (cM)
QTL Span:7.98-8.18 (cM)
5.4-5.5 (Mbp)
Upper, "Suggestive":n/a
Upper, "Significant":n/a
Peak:
Lower, "Significant":n/a
Lower, "Suggestive":n/a
Marker type:
Analysis type:Association
Model tested:Mendelian
Test base:Experiment-wise
Threshold significance level:Significant
P_values0.00062
Dominance effect:n/a
Additive effect:n/a
Associated Gene:ANGPT2 (angiopoietin 2)
Cis/Trans acting type:
Links:   NCBI GeneDB  |  Edit  |   Map view

 Extended information:
(none)

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  •  QTL Experiment in Brief
    Animals:Animals were German Holstein cattle.
     Breeds associated:
    Design:Animals were genotyped for four polymorphisms in ANGPT2 and analyzed for somatic cell score.
    Analysis:A weighted linear regression model was used.
    Software:ASReml, R
    Notes: 
    Links:Edit

     Reference
    Authors:Tetens J, Baes C, Kühn C, Reinsch N, Thaller G
    Affiliation:Christian-Albrechts-University Kiel, Institute of Animal Breeding and Husbandry, 24098 Kiel, Germany
    Title:Angiopoietin-2 (ANGPT2) as a candidate gene for somatic cell score in German Holstein cattle
    Journal:Journal of dairy science, 2013, 96(8): 5388-97
    Links:  PubMed  |  Abstract   |  List all data   |  Edit  

     Additional Information
    Comments:ANGPT2_c.292-100A>G; DYD
    User inputs on reference #23726425
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  • Cite this Data:

    Animal QTLdb: QTL25267 was published in 2013, and was curated into QTLdb on 2014-05-15. DBxREF link to this data: https://www.animalgenome.org/QTLdb/q?id=QTL_ID:25267

     

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