Release 56
(Apr 24, 2025)

QTL 25026 Description:

 Trait Information
Trait name: Somatic cell count Vertebrate Trait Ontology: Milk somatic cell quantity
Reported name: Somatic Cell Count Product Trait Ontology: Milk somatic cell count
Symbol: SCC Clinical Measurement Ontology: Milk somatic cell count
 QTL Map Information
Chromosome:7
QTL Peak Location:82.15 (cM)
QTL Span:82.15-82.15 (cM)
65.9-65.9 (Mbp)
Upper, "Suggestive":n/a
Upper, "Significant":n/a
Peak:rs41613091
Lower, "Significant":n/a
Lower, "Suggestive":n/a
Marker type:SNP
Analysis type:Association
Model tested:Mendelian
Test base:Comparison-wise
Threshold significance level:Significant
P_values4.74E-11
Dominance effect:n/a
Additive effect:n/a
Associated Gene:LARP1 (La ribonucleoprotein domain family, member 1)
Cis/Trans acting type:
Links:   NCBI GeneDB  |  Edit  |   Map view

 Extended information:
(none)

User inputs on QTL #25026
  • Add your annotations
  • Add your comments
  • Report problems
  •  QTL Experiment in Brief
    Animals:Animals were Holstein and Jersey cattle.
     Breeds associated:
    Design:Animals were genotyped using either the Illumina BovineHD BeadChip or the Illumina 50k Bovine BeadChip and analyzed for milk production, health, and reproductive traits.
    Analysis:A mixed model was used.
    Software:ASReml
    Notes: 
    Links:Edit

     Reference
    Authors:Raven LA, Cocks BG, Hayes BJ
    Affiliation:Biosciences Research Division, Department of Primary Industries Victoria, 5 Ring Road, Bundoora 3086, Australia
    Title:Multibreed genome wide association can improve precision of mapping causative variants underlying milk production in dairy cattle
    Journal:BMC genomics, 2014, 15: 62
    Links:  PubMed  |  Abstract   |  List all data   |  Edit  
    User inputs on reference #24456127
  • Add your comments
  • Note similar findings
  • Note contradictions
  • Cite this Data:

    Animal QTLdb: QTL25026 was published in 2014, and was curated into QTLdb on 2014-04-18. DBxREF link to this data: https://www.animalgenome.org/QTLdb/q?id=QTL_ID:25026

     

    © 2003-2025: USA · USDA · NRPSP8 · Program to Accelerate Animal Genomics Applications. Contact: Bioinformatics Team