| QTL Map Information |
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| Chromosome: | 18 |
| QTL Peak Location: | n/a |
| QTL Span: | n/a
|
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Upper, "Suggestive": | n/a |
| Upper, "Significant": | rs137769615 |
| Peak: | rs29014956 |
| Lower, "Significant": | n/a |
| Lower, "Suggestive": | n/a |
| Marker type: | SNP |
| Analysis type: | eQTL |
| Model tested: | n/a |
| Test base: | Comparison-wise |
| Threshold significance level: | Significant |
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P_values | 5.1E-6 | | Dominance effect: | n/a |
| Additive effect: | n/a |
| Associated Gene: | FCSK (fucose kinase) |
| Cis/Trans acting type: | cis  |
| Links:
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| Extended information: |
|---|
| (none) |
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| QTL Experiment in Brief |
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| Animals: | Animals were Holstein, Jersey, and crossbred bulls and cows. |
| Breeds associated:
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| Design: | Animals were genotyped using the Illumina 10K, BovineSNP50, or BovineHD BeadChip, with all animals imputed to sequence level genotypes, and GWAS was performed for milk quality traits. eQTL detection was also carried out. |
| Analysis: | A mixed linear model was used for GWAS. For each variant in the dataset, the association with the expression of each gene within 1Mb of the variant was estimated using a linear model. |
| Software: | FImpute, GCTA, METAL, EMMAX |
| Notes: | |
| Links: | Edit |
| Reference |
|---|
| Authors: | van den Berg I, Hayes B J, Chamberlain A J, Goddard M E |
| Affiliation: | Faculty of Veterinary & Agricultural Science, University of Melbourne, Parkville, Victoria, Australia |
| Title: | Overlap between eQTL and QTL associated with production traits and fertility in dairy cattle |
| Journal: | BMC Genomics, 2019, 20(1): 291 |
| Links: |
PubMed | Abstract | List all data
| Edit |
| Additional Information |
|---|
| Comments: | milk cells |
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