| QTL Map Information |
|---|
| Chromosome: | 13 |
| QTL Peak Location: | n/a |
| QTL Span: | n/a
46.6-46.6 (Mbp) |
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Upper, "Suggestive": | n/a |
| Upper, "Significant": | n/a |
| Peak: | rs110079494 |
| Lower, "Significant": | n/a |
| Lower, "Suggestive": | n/a |
| Marker type: | SNP |
| Analysis type: | Association |
| Model tested: | n/a |
| Test base: | Comparison-wise |
| Threshold significance level: | Significant |
 |
P_values | 6.68E-7 | | Dominance effect: | n/a |
| Additive effect: | n/a |
| Associated Gene: | n/a |
| Cis/Trans acting type: |  |
| Links:
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| Extended information: |
|---|
| (none) |
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| QTL Experiment in Brief |
|---|
| Animals: | Animals were Holstein dairy cattle. |
| Breeds associated:
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| Design: | Animals were genotyped using the Illumina BovineHD BeadChip and analyzed for incidence of non-infectious claw lesions. Approximately 556,000 SNPs were used for analysis. |
| Analysis: | GWAS were performed using the generalized linear mixed model, chunk-based association testing, and a random forest approach. |
| Software: | PLINK 1.9, Beagle 5.1, GEMMA, GMMAT in R |
| Notes: | |
| Links: | Edit |
| Reference |
|---|
| Authors: | Lai E, Danner AL, Famula TR, Oberbauer AM |
| Affiliation: | Animal Science Department, University of California, Davis, Davis, CA, United States |
| Title: | Genome-Wide Association Studies Reveal Susceptibility Loci for Noninfectious Claw Lesions in Holstein Dairy Cattle |
| Journal: | Frontiers in genetics, 2021, 12: 657375 |
| Links: |
PubMed | Abstract | List all data
| Edit |
| Additional Information |
|---|
| Comments: | GLMM analysis |
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