| QTL Map Information |
|---|
| Chromosome: | 9 |
| QTL Peak Location: | 35.13 (cM) |
| QTL Span: | 35.13-35.13 (cM)
32.1-32.1 (Mbp) |
 |
Upper, "Suggestive": | n/a |
| Upper, "Significant": | n/a |
| Peak: | rs43593958 |
| Lower, "Significant": | n/a |
| Lower, "Suggestive": | n/a |
| Marker type: | SNP |
| Analysis type: | Association |
| Model tested: | n/a |
| Test base: | Genome-wise |
| Threshold significance level: | Significant |
 |
P_values | <0.05 | | Dominance effect: | n/a |
| Additive effect: | n/a |
| Associated Gene: | n/a |
| Cis/Trans acting type: |  |
| Links:
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| Extended information: |
|---|
| (none) |
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| QTL Experiment in Brief |
|---|
| Animals: | Animals were Japanese Black cattle. |
| Breeds associated:
|
| Design: | Animals were genotyped using the Illumina BovineSNP50 BeadChip, and GWAS was performed for calf mortality. A total of 33,296 SNPs were used for analysis. |
| Analysis: | Calf mortality was evaluated as a categorical trait using a threshold model. |
| Software: | THRGIBBS1F90, POSTGIBBSF90, Beagle 3.3.2 |
| Notes: | |
| Links: | Edit |
| Reference |
|---|
| Authors: | Sasaki S, Ibi T |
| Affiliation: | Graduate School of Environmental and Life Science, Okayama University, Tsushima-naka, Okayama, 700-8530, Japan |
| Title: | A genome-wide association study reveals a quantitative trait locus for calf mortality on chromosome 9 in Japanese Black cattle |
| Journal: | Anim Genet, 2021, 52(2): 214-216 |
| Links: |
PubMed | Abstract | List all data
| Edit |
| Additional Information |
|---|
| Comments: | 61-180 days after birth |
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