| QTL Map Information |
|---|
| Chromosome: | 19 |
| QTL Peak Location: | 38.64 (cM) |
| QTL Span: | 38.64-38.64 (cM)
20.9-20.9 (Mbp) |
 |
Upper, "Suggestive": | n/a |
| Upper, "Significant": | n/a |
| Peak: | rs110369628 |
| Lower, "Significant": | n/a |
| Lower, "Suggestive": | n/a |
| Marker type: | SNP |
| Analysis type: | Association |
| Model tested: | n/a |
| Test base: | Chromosome-wise |
| Threshold significance level: | Significant |
 |
P_values | <0.05 | | Dominance effect: | n/a |
| Additive effect: | n/a |
| Associated Gene: | SSH2 (slingshot protein phosphatase 2) |
| Cis/Trans acting type: |  |
| Links:
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| Extended information: |
|---|
| (none) |
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| QTL Experiment in Brief |
|---|
| Animals: | Animals were indigenous cattle from the four main breeds in Benin (Borgou, Pabli, Lagune, and Somba). |
| Breeds associated:
n/a
|
| Design: | Animals were genotyped using the Illumina BovineSNP50 BeadChip and analyzed for growth and conformation traits. A total of 36,720 SNPs were used for analysis. |
| Analysis: | Linear regression using an additive genetic model was employed for GWAS. |
| Software: | PLINK, GCTA |
| Notes: | |
| Links: | Edit |
| Reference |
|---|
| Authors: | Vanvanhossou SFU, Scheper C, Dossa LH, Yin T, Brügemann K, König S |
| Affiliation: | Institute of Animal Breeding and Genetics, Justus-Liebig-University Gießen, Gießen, Germany |
| Title: | A multi-breed GWAS for morphometric traits in four Beninese indigenous cattle breeds reveals loci associated with conformation, carcass and adaptive traits |
| Journal: | BMC genomics, 2020, 21(1): 783 |
| Links: |
PubMed | Abstract | List all data
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