| QTL Map Information |
|---|
| Chromosome: | 29 |
| QTL Peak Location: | 48.02 (cM) |
| QTL Span: | 47.32-48.73 (cM)
34.1-35.1 (Mbp) |
 |
Upper, "Suggestive": | n/a |
| Upper, "Significant": | rs42159412 |
| Peak: | |
| Lower, "Significant": | rs109052293 |
| Lower, "Suggestive": | n/a |
| Marker type: | SNP |
| Analysis type: | QTL |
| Model tested: | n/a |
| Test base: | n/a |
| Threshold significance level: | Significant |
 |
VARIANCE | 1.18% | | Dominance effect: | n/a |
| Additive effect: | n/a |
| Associated Gene: | n/a |
| Cis/Trans acting type: |  |
| Links:
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| Extended information: |
|---|
| (none) |
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| QTL Experiment in Brief |
|---|
| Animals: | Animals were crossbred beef bulls, with the predominant breeds Angus, Simmental, Piedmontese, Gelbvieh, Charolais, and Limousin. |
| Breeds associated:
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| Design: | Animals were genotyped using the Affymetrix Genechip Bovine Genome High Density Array and analyzed for scrotal circumference and sperm motility. A total of 379,591 SNPs were used for analysis. |
| Analysis: | Weighted single-step genomic BLUP analysis was performed. |
| Software: | PLINK, BLUPF90, AIREMLF90, R software, GALLO in R |
| Notes: | |
| Links: | Edit |
| Reference |
|---|
| Authors: | Sweett H, Fonseca PAS, Suárez-Vega A, Livernois A, Miglior F, Cánovas A |
| Affiliation: | Department of Animal Biosciences, Centre for Genetic Improvement of Livestock, University of Guelph, Guelph, ON, N1G 2W1, Canada |
| Title: | Genome-wide association study to identify genomic regions and positional candidate genes associated with male fertility in beef cattle |
| Journal: | Scientific reports, 2020, 10(1): 20102 |
| Links: |
PubMed | Abstract | List all data
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