| QTL Map Information |
|---|
| Chromosome: | 14 |
| QTL Peak Location: | 36.44 (cM) |
| QTL Span: | 36.44-36.44 (cM)
26.2-26.2 (Mbp) |
 |
Upper, "Suggestive": | n/a |
| Upper, "Significant": | n/a |
| Peak: | rs43054543 |
| Lower, "Significant": | n/a |
| Lower, "Suggestive": | n/a |
| Marker type: | SNP |
| Analysis type: | Association |
| Model tested: | Mendelian |
| Test base: | Genome-wise |
| Threshold significance level: | Significant |
 |
P_values | <0.05 | | Dominance effect: | n/a |
| Additive effect: | n/a |
| Associated Gene: | n/a |
| Cis/Trans acting type: |  |
| Links:
NCBI GeneDB | Edit |
Map view
|
| Extended information: |
|---|
| (none) |
User inputs on QTL #21189
Add your annotations
Add your comments
Report problems
|
| QTL Experiment in Brief |
|---|
| Animals: | Animals were Japanese Black steers. |
| Breeds associated:
|
| Design: | For GWAS, animals were genotyped using the BovineSNP50 BeadChip. For analysis of association with carcass weight, 39011 SNP were used. QTL analysis was performed using an interval mapping method with a linear regression model for half-sib families. |
| Analysis: | A linear mixed model approach was used. QTL analyses were performed with the interval mapping method using a linear regression model for half-sib families. |
| Software: | EMMAX |
| Notes: | |
| Links: | Edit |
| Reference |
|---|
| Authors: | Nishimura S, Watanabe T, Mizoshita K, Tatsuda K, Fujita T, Watanabe N, Sugimoto Y, Takasuga A |
| Affiliation: | Shirakawa Institute of Animal Genetics, Japan Livestock Technology Association, Odakura, Nishigo, Fukushima, 961-8061, Japan. |
| Title: | Genome-wide association study identified three major QTL for carcass weight including the PLAG1-CHCHD7 QTN for stature in Japanese Black cattle. |
| Journal: | BMC genetics, 2012, 13: 40 |
| Links: |
PubMed | Abstract | List all data
| Edit |
User inputs on reference #22607022
Add your comments
Note similar findings
Note contradictions
|
