| QTL Map Information |
|---|
| Chromosome: | 16 |
| QTL Peak Location: | 66.00 (cM) |
| QTL Span: | 66.00-66.00 (cM)
52.0-52.0 (Mbp) |
 |
Upper, "Suggestive": | n/a |
| Upper, "Significant": | n/a |
| Peak: | rs136182707 |
| Lower, "Significant": | n/a |
| Lower, "Suggestive": | n/a |
| Marker type: | SNP |
| Analysis type: | Association |
| Model tested: | Mendelian |
| Test base: | Experiment-wise |
| Threshold significance level: | Significant |
 |
FDR | <0.05 | | Dominance effect: | n/a |
| Additive effect: | n/a |
| Associated Gene: | n/a |
| Cis/Trans acting type: |  |
| Links:
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| Extended information: |
|---|
| (none) |
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| QTL Experiment in Brief |
|---|
| Animals: | Animals were Holstein cattle. |
| Breeds associated:
|
| Design: | Sires were genotyped using a custom panel containing 155 of the most prominent SNPs related to Johne's disease and analyzed for EBV for milk ELISA test score, an indirect indicator of MAP infection status. |
| Analysis: | Association analysis was carried out using the Generalized Quasi-Likelihood Score (GQLS) method and a single-SNP regression analysis. |
| Software: | SNP1101 |
| Notes: | |
| Links: | Edit |
| Reference |
|---|
| Authors: | Mallikarjunappa S, Schenkel FS, Brito LF, Bissonnette N, Miglior F, Chesnais J, Lohuis M, Meade KG, Karrow NA |
| Affiliation: | Centre for Genetic Improvement of Livestock, Department of Animal Biosciences, University of Guelph, Guelph, ON, N1G 2W1, Canada |
| Title: | Association of genetic polymorphisms related to Johne's disease with estimated breeding values of Holstein sires for milk ELISA test scores |
| Journal: | BMC veterinary research, 2020, 16(1): 165 |
| Links: |
PubMed | Abstract | List all data
| Edit |
| Additional Information |
|---|
| Comments: | EBV for milk ELISA test scores; single-SNP regression method |
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