Release 56
(Apr 24, 2025)

QTL 21104 Description:

 Trait Information
Trait name: Somatic cell score Vertebrate Trait Ontology: Milk somatic cell quantity
Reported name: Somatic cell score Product Trait Ontology: Milk somatic cell count
Symbol: SCS Clinical Measurement Ontology: Milk somatic cell score
 QTL Map Information
Chromosome:3
QTL Peak Location:27.8 (cM)
QTL Span:10.26-10.46 (cM)
9.6-9.8 (Mbp)
Upper, "Suggestive":n/a
Upper, "Significant":n/a
Peak:
Lower, "Significant":n/a
Lower, "Suggestive":n/a
Marker type:
Analysis type:Association
Model tested:Mendelian
Test base:n/a
Threshold significance level:Significant
P_values<0.01
Dominance effect:n/a
Additive effect:n/a
Associated Gene:ATP1A1 (ATPase, Na+/K+ transporting, alpha 1 polypeptide)
Cis/Trans acting type:
Links:   NCBI GeneDB  |  Edit  |   Map view

 Extended information:
(none)

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  •  QTL Experiment in Brief
    Animals:Animals were Holstein cows.
     Breeds associated:
    Design:Animals were genotyped for SNPs in ATP1A1 and analyzed for SCS and milk yield.
    Analysis:The general linear model was used.
    Software:POPGENE, SPSS
    Notes: 
    Links:Edit

     Reference
    Authors:Liu Y X, Xu C H, Gao T Y, Sun Y
    Affiliation:College of Basic Medical Sciences, Henan University of Traditional Chinese Medicine, Zhengzhou, China.
    Title:Polymorphisms of the ATP1A1 gene associated with mastitis in dairy cattle.
    Journal:Genetics and molecular research : GMR, 2012, 11 (1): 651-60
    Links:  PubMed  |  Abstract   |  List all data   |  Edit  
    User inputs on reference #22535401
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  • Cite this Data:

    Animal QTLdb: QTL21104 was published in 2012, and was curated into QTLdb on 2013-05-24. DBxREF link to this data: https://www.animalgenome.org/QTLdb/q?id=QTL_ID:21104

     

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