Release 56
(Apr 24, 2025)

QTL 20876 Description:

 Trait Information
Trait name: Subcutaneous fat thickness Vertebrate Trait Ontology: Subcutaneous adipose thickness
Trait details: rump fat thickness measured at the P8 position Product Trait Ontology: n/a
Symbol: SUBFAT Clinical Measurement Ontology: n/a
 QTL Map Information
Chromosome:14
QTL Peak Location:32.14 (cM)
QTL Span:32.14-32.14 (cM)
23.0-23.0 (Mbp)
Upper, "Suggestive":n/a
Upper, "Significant":n/a
Peak:rs41724387
Lower, "Significant":n/a
Lower, "Suggestive":n/a
Marker type:SNP
Analysis type:Association
Model tested:Mendelian
Test base:n/a
Threshold significance level:Significant
P_values5.3E-4
Dominance effect:n/a
Additive effect:n/a
Associated Gene:XKR4 (XK, Kell blood group complex subunit-related family, member 4)
Cis/Trans acting type:
Links:   Edit  |   Map view

 Extended information:
(none)

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  •  QTL Experiment in Brief
    Animals:Animals were Belmont Red and Santa Gertrudis cattle.
     Breeds associated:
    Design:Animals were genotyped for four SNPs in XKR4 and analyzed for rump fat thickness.
    Analysis:Linear mixed models were used.
    Software:ASREML
    Notes: 
    Links:Edit

     Reference
    Authors:Porto Neto L R, Bunch R J, Harrison B E, Barendse W
    Affiliation:Cooperative Research Centre for Beef Genetic Technologies, CSIRO Livestock Industries, Queensland Bioscience Precinct, 306 Carmody Road, St. Lucia, Qld, 4067, Australia.
    Title:Variation in the XKR4 gene was significantly associated with subcutaneous rump fat thickness in indicine and composite cattle.
    Journal:Animal genetics, 2012, 43 (6): 785-9
    Links:  PubMed  |  Abstract   |  List all data   |  Edit  
    User inputs on reference #22497494
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  • Cite this Data:

    Animal QTLdb: QTL20876 was published in 2012, and was curated into QTLdb on 2013-05-20. DBxREF link to this data: https://www.animalgenome.org/QTLdb/q?id=QTL_ID:20876

     

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