Release 56
(Apr 24, 2025)

QTL 20678 Description:

 Trait Information
Trait name: Subcutaneous fat thickness Vertebrate Trait Ontology: Subcutaneous adipose thickness
Reported name: Fat thickness at the 12th rib Product Trait Ontology: n/a
Symbol: FATTH Clinical Measurement Ontology: n/a
 QTL Map Information
Chromosome:4
QTL Peak Location:111.31 (cM)
QTL Span:111.31-111.31 (cM)
112.8-112.8 (Mbp)
Upper, "Suggestive":n/a
Upper, "Significant":n/a
Peak:rs133399845
Lower, "Significant":n/a
Lower, "Suggestive":n/a
Marker type:SNP
Analysis type:Association
Model tested:Mendelian
Test base:Comparison-wise
Threshold significance level:Significant
P_values0.016
Dominance effect:n/a
Additive effect:n/a
Associated Gene:RARRES2 (retinoic acid receptor responder (tazarotene induced) 2)
Cis/Trans acting type:
Links:   Edit  |   Map view

 Extended information:
(none)

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  •  QTL Experiment in Brief
    Animals:Animals were from a population derived from Angus, Hereford, Simmental, Limousin, Charolais, Gelbvieh, and Red Angus sires bred to composite MARC III, Angus, or Hereford cows.
     Breeds associated:
    n/a
    Design:Animals were genotyped for 16 markers in and around RARRES2 on chromosome 4 and analyzed for feed efficiency, meat quality, carcass, and body condition traits.
    Analysis:An animal model was used.
    Software:MTDFREML
    Notes: 
    Links:Edit

     Reference
    Authors:Lindholm-Perry Amanda K, Kuehn Larry A, Rempel Lea A, Smith Timothy P L, Cushman Robert A, McDaneld Tara G, Wheeler Tommy L, Shackelford Steven D, King David A, Freetly Harvey C,
    Affiliation:U.S. Meat Animal Research Center, Agricultural Research Service, United States Department of Agriculture Clay Center, NE, USA.
    Title:Evaluation of Bovine chemerin (RARRES2) Gene Variation on Beef Cattle Production Traits.
    Journal:Frontiers in genetics, 2012, 3:39
    Links:  PubMed  |  Abstract   |  List all data   |  Edit  
    User inputs on reference #22479267
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  • Cite this Data:

    Animal QTLdb: QTL20678 was published in 2012, and was curated into QTLdb on 2013-05-03. DBxREF link to this data: https://www.animalgenome.org/QTLdb/q?id=QTL_ID:20678

     

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