Release 56
(Apr 24, 2025)

QTL 20664 Description:

 Trait Information
Trait name: Fat color Vertebrate Trait Ontology: White adipose morphology trait
Reported name: Fat color in carcass Product Trait Ontology: n/a
Symbol: FATCOL Clinical Measurement Ontology: n/a
 QTL Map Information
Chromosome:14
QTL Peak Location:25.4 (cM)
QTL Span:8.91-9.11 (cM)
7.1-7.2 (Mbp)
Upper, "Suggestive":n/a
Upper, "Significant":n/a
Peak:
Lower, "Significant":n/a
Lower, "Suggestive":n/a
Marker type:
Analysis type:Association
Model tested:Mendelian
Test base:n/a
Threshold significance level:Significant
P_values<0.05
Dominance effect:n/a
Additive effect:n/a
Associated Gene:SDR16C5 (short chain dehydrogenase/reductase family 16C, member 5)
Cis/Trans acting type:
Links:   NCBI GeneDB  |  Edit  |   Map view

 Extended information:
Epistatic QTL found:QTL20655 QTL20664

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  •  QTL Experiment in Brief
    Animals:Animals were Jersey x Limousin, Holstein-Friesian, Jersey, or cattle of unknown breed.
     Breeds associated:
    Design:Animals were genotyped for two SNPs in RDHE2 (SDR16C5) and one in BCO2 and analyzed for fat color traits.
    Analysis:ANOVA was performed.
    Software: 
    Notes: 
    Links:Edit

     Reference
    Authors:Tian R, Cullen NG, Morris CA, Fisher PJ, Pitchford WS, Bottema CD
    Affiliation:School of Animal & Veterinary Sciences, University of Adelaide, Roseworthy Campus, Roseworthy, SA, 5371, Australia.
    Title:Major effect of retinal short-chain dehydrogenase reductase (RDHE2) on bovine fat colour.
    Journal:Mammalian genome, 2012, 23 (5-6): 378-86
    Links:  PubMed  |  Abstract   |  List all data   |  Edit  

     Additional Information
    Comments:Australian population; V6A
    User inputs on reference #22451137
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  • Cite this Data:

    Animal QTLdb: QTL20664 was published in 2012, and was curated into QTLdb on 2013-05-02. DBxREF link to this data: https://www.animalgenome.org/QTLdb/q?id=QTL_ID:20664

     

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