Release 56
(Apr 24, 2025)

QTL 20598 Description:

 Trait Information
Trait name: Somatic cell score Vertebrate Trait Ontology: Milk somatic cell quantity
Reported name: Somatic cell score Product Trait Ontology: Milk somatic cell count
Symbol: SCS Clinical Measurement Ontology: Milk somatic cell score
 QTL Map Information
Chromosome:5
QTL Peak Location:101 (cM)
QTL Span:112.91-113.11 (cM)
102.5-102.7 (Mbp)
Upper, "Suggestive":n/a
Upper, "Significant":n/a
Peak:
Lower, "Significant":n/a
Lower, "Suggestive":n/a
Marker type:
Analysis type:Association
Model tested:Mendelian
Test base:n/a
Threshold significance level:Significant
P_values0.011
Dominance effect:n/a
Additive effect:n/a
Associated Gene:OLR1 (oxidized low density lipoprotein (lectin-like) receptor 1)
Cis/Trans acting type:
Links:   NCBI GeneDB  |  Edit  |   Map view

 Extended information:
(none)

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  •  QTL Experiment in Brief
    Animals:Animals were Israeli Holstein cattle.
     Breeds associated:
    Design:Animals were genotyped for a SNP in OLR1 and analyzed for milk production traits.
    Analysis:A mixed linear model was used.
    Software:R software
    Notes: 
    Links:Edit

     Reference
    Authors:Wang X, Peņagaricano F, Tal-Stein R, Lipkin E, Khatib H
    Affiliation:College of Animal Science and Technology, Northwest A&F University, Yangling, Shaanxi 712100, PR China.
    Title:Short communication: Association of an OLR1 polymorphism with milk production traits in the Israeli Holstein population.
    Journal:Journal of dairy science, 2012, 95 (3): 1565-7
    Links:  PubMed  |  Abstract   |  List all data   |  Edit  

     Additional Information
    Comments:SNP10497
    User inputs on reference #22365237
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  • Cite this Data:

    Animal QTLdb: QTL20598 was published in 2012, and was curated into QTLdb on 2013-04-25. DBxREF link to this data: https://www.animalgenome.org/QTLdb/q?id=QTL_ID:20598

     

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