| QTL Map Information |
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| Chromosome: | 13 |
| QTL Peak Location: | 33.72 (cM) |
| QTL Span: | 33.72-33.72 (cM)
28.0-28.0 (Mbp) |
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Upper, "Suggestive": | n/a |
| Upper, "Significant": | n/a |
| Peak: | rs110163236 |
| Lower, "Significant": | n/a |
| Lower, "Suggestive": | n/a |
| Marker type: | SNP |
| Analysis type: | QTL |
| Model tested: | Mendelian |
| Test base: | Genome-wise |
| Threshold significance level: | Significant |
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P_values | 0.022616837 | | Dominance effect: | n/a |
| Additive effect: | n/a |
| Associated Gene: | n/a |
| Cis/Trans acting type: |  |
| Links:
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| Extended information: |
|---|
| (none) |
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| QTL Experiment in Brief |
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| Animals: | The data set consisted of 709 Angus/Salers cross heifers
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| Breeds associated:
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| Design: | Animals were genotyped using the GeneSeek Bovine GGP50K BeadChip to identify loci and leading edge genes associated with TBRD (times bred) and HCR1 (heifer conception rate). Data was collected on healthy animals from one ranch in central Montana. |
| Analysis: | A genome-wide association analysis (GWAA) identified loci and a gene set enrichment analysis with SNP data (GSEA-SNP) identified gene sets and leading edge genes influencing TBRD and HCR1. |
| Software: | Golden Helix SNP and Variation Suite (SVS), R - GenAbel |
| Notes: | |
| Links: | Edit |
| Reference |
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| Authors: | Oliver KF, Geary TW, Kiser JN, Galliou JM, Van Emon ML, Seabury CM, Spencer TE, Neibergs HL |
| Affiliation: | Washington State University; USDA-ARS Fort Keogh; Montana State University; Texas A&M University; University of Missouri |
| Title: | Loci associated with conception rate in crossbred beef heifers |
| Journal: | PLoS ONE, 2020, 9;15(4):e0230422 |
| Links: |
PubMed | Abstract | List all data
| Edit |
| Additional Information |
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| Comments: | GSEA gene proxy for PHYH |
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